RNA–Protein interactions for RNA: YKL130C

SHE2, Transcript of RNA-binding protein that binds specific mRNAs and interacts with She3p, yeast

Gene SHE2, Length 741 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHE2	YKL130C	YGL041C-B	Q3E750	60 aa		0.95	□□□□□ -2.26
SHE2	YKL130C	YLR285C-A	Q3E771	56 aa		0.95	□□□□□ -2.26
SHE2	YKL130C	YGR240C-A	Q3E786	66 aa		0.95	□□□□□ -2.26
SHE2	YKL130C	YHR213W-A	Q8TGT4	77 aa		0.95	□□□□□ -2.26
SHE2	YKL130C	YDR034C-A	P0C289	58 aa		0.94	□□□□□ -2.26
SHE2	YKL130C	PAU19	P0CE85	124 aa		0.94	□□□□□ -2.26
SHE2	YKL130C	PAU3	P25610	124 aa		0.94	□□□□□ -2.26
SHE2	YKL130C	SNU13	P39990	126 aa	Known RBP	0.94	□□□□□ -2.26
SHE2	YKL130C	TOM7	P53507	60 aa		0.94	□□□□□ -2.26
SHE2	YKL130C	QCR9	P22289	66 aa		0.93	□□□□□ -2.26
SHE2	YKL130C	YBR292C	P38357	123 aa		0.93	□□□□□ -2.26
SHE2	YKL130C	YEA6	P39953	335 aa		0.93	□□□□□ -2.26
SHE2	YKL130C	YMR141C	P40211	102 aa		0.93	□□□□□ -2.26
SHE2	YKL130C	RPL37B	P51402	88 aa	Known RBP	0.93	□□□□□ -2.26
SHE2	YKL130C	PMP3	P87284	55 aa		0.93	□□□□□ -2.26
SHE2	YKL130C	LCL1	Q02786	101 aa		0.93	□□□□□ -2.26
SHE2	YKL130C	YMR103C	Q04436	120 aa		0.93	□□□□□ -2.26
SHE2	YKL130C	HMRA2	P0CY13	119 aa		0.92	□□□□□ -2.26
SHE2	YKL130C	YBR090C	P38253	122 aa		0.92	□□□□□ -2.26
SHE2	YKL130C	YDR029W	Q12111	104 aa		0.92	□□□□□ -2.26
SHE2	YKL130C	FYV7	Q12247	151 aa		0.92	□□□□□ -2.26
SHE2	YKL130C	SNA2	P56508	79 aa		0.91	□□□□□ -2.26
SHE2	YKL130C	YOR105W	Q08504	108 aa		0.91	□□□□□ -2.26
SHE2	YKL130C	POC4	Q12245	148 aa	Predicted RBP	0.91	□□□□□ -2.26
SHE2	YKL130C	YLR342W-A	Q3E810	57 aa		0.91	□□□□□ -2.26
SHE2	YKL130C	TRA1	P38811	3744 aa		0.9	□□□□□ -2.26
SHE2	YKL130C	UBC5	P15732	148 aa		0.9	□□□□□ -2.27
SHE2	YKL130C	YHR173C	P38864	112 aa		0.9	□□□□□ -2.27
SHE2	YKL130C	IMP2	P46972	177 aa		0.9	□□□□□ -2.27
SHE2	YKL130C	YMR122W-A	Q3E842	84 aa		0.9	□□□□□ -2.27
SHE2	YKL130C	MIC10	Q96VH5	97 aa		0.9	□□□□□ -2.27
SHE2	YKL130C	YER188C-A	P0C0V2	99 aa		0.89	□□□□□ -2.27
SHE2	YKL130C	UBC4	P15731	148 aa		0.89	□□□□□ -2.27
SHE2	YKL130C	SRB6	P32570	121 aa		0.89	□□□□□ -2.27
SHE2	YKL130C	PAU16	P35994	123 aa		0.89	□□□□□ -2.27
SHE2	YKL130C	LSM2	P38203	95 aa	Known RBP	0.89	□□□□□ -2.27
SHE2	YKL130C	PAU7	P39545	55 aa		0.89	□□□□□ -2.27
SHE2	YKL130C	AIM19	P40502	157 aa		0.89	□□□□□ -2.27
SHE2	YKL130C	PAU15	P40585	124 aa		0.89	□□□□□ -2.27
SHE2	YKL130C	PAU5	P43575	122 aa		0.89	□□□□□ -2.27
SHE2	YKL130C	YJR128W	P47162	119 aa		0.89	□□□□□ -2.27
SHE2	YKL130C	PAU4	P53427	120 aa		0.89	□□□□□ -2.27
SHE2	YKL130C	YMR082C	Q04276	118 aa		0.89	□□□□□ -2.27
SHE2	YKL130C	LSM6	Q06406	86 aa	Known RBP	0.89	□□□□□ -2.27
SHE2	YKL130C	COA2	Q3E823	68 aa		0.89	□□□□□ -2.27
SHE2	YKL130C	PAU1	P0CE88	120 aa		0.88	□□□□□ -2.27
SHE2	YKL130C	PAU14	P0CE89	120 aa		0.88	□□□□□ -2.27
SHE2	YKL130C	PAU6	P0CE90	120 aa		0.88	□□□□□ -2.27
SHE2	YKL130C	PAU18	P0CE91	120 aa		0.88	□□□□□ -2.27
SHE2	YKL130C	PAU8	P0CE92	120 aa		0.88	□□□□□ -2.27
SHE2	YKL130C	PAU11	P0CE93	120 aa		0.88	□□□□□ -2.27
SHE2	YKL130C	PAU13	P38725	120 aa		0.88	□□□□□ -2.27
SHE2	YKL130C	GCV3	P39726	170 aa	Predicted RBP	0.88	□□□□□ -2.27
SHE2	YKL130C	PAU10	Q03050	120 aa		0.88	□□□□□ -2.27
SHE2	YKL130C	PAU20	Q08322	120 aa		0.88	□□□□□ -2.27
SHE2	YKL130C	YOR034C-A	Q3E735	80 aa		0.88	□□□□□ -2.27
SHE2	YKL130C	YBR200W-A	Q3E755	54 aa		0.88	□□□□□ -2.27
SHE2	YKL130C	YMR175W-A	Q3E766	64 aa		0.88	□□□□□ -2.27
SHE2	YKL130C	PAU9	Q3E770	120 aa		0.88	□□□□□ -2.27
SHE2	YKL130C	RRT15	Q3E811	62 aa		0.88	□□□□□ -2.27
SHE2	YKL130C	YLR307C-A	Q3E825	87 aa		0.88	□□□□□ -2.27
SHE2	YKL130C	Q0032	Q9ZZX7	96 aa		0.88	□□□□□ -2.27
SHE2	YKL130C	ECM12	O13529	151 aa		0.87	□□□□□ -2.27
SHE2	YKL130C	SHU1	P38751	150 aa		0.87	□□□□□ -2.27
SHE2	YKL130C	YGR025W	P53216	100 aa		0.87	□□□□□ -2.27
SHE2	YKL130C	KSH1	Q8TGJ3	72 aa		0.87	□□□□□ -2.27
SHE2	YKL130C	YLL066W-B	Q8TGJ7	56 aa		0.87	□□□□□ -2.27
SHE2	YKL130C	MDN1	Q12019	4910 aa	Known RBP	0.86	□□□□□ -2.27
SHE2	YKL130C	HMRA1	P0CY11	126 aa		0.86	□□□□□ -2.27
SHE2	YKL130C	SPI1	P40092	148 aa		0.86	□□□□□ -2.27
SHE2	YKL130C	RPC10	P40422	70 aa		0.86	□□□□□ -2.27
SHE2	YKL130C	CWP2	P43497	92 aa		0.86	□□□□□ -2.27
SHE2	YKL130C	MRPS12	P53732	153 aa		0.86	□□□□□ -2.27
SHE2	YKL130C	ZEO1	Q08245	113 aa		0.86	□□□□□ -2.27
SHE2	YKL130C	YDR010C	Q12426	110 aa		0.86	□□□□□ -2.27
SHE2	YKL130C	YOR008C-A	Q3E7B9	74 aa		0.86	□□□□□ -2.27
SHE2	YKL130C	YCL001W-B	Q96VH2	84 aa		0.85	□□□□□ -2.27
SHE2	YKL130C	YBL039W-B	P0C268	59 aa		0.84	□□□□□ -2.27
SHE2	YKL130C	COX19	Q3E731	98 aa		0.84	□□□□□ -2.27
SHE2	YKL130C	COX7	P10174	60 aa		0.83	□□□□□ -2.28
SHE2	YKL130C	YDR042C	Q03205	200 aa		0.83	□□□□□ -2.28
SHE2	YKL130C	YGL194C-A	Q2V2P6	80 aa		0.83	□□□□□ -2.28
SHE2	YKL130C	YNR034W-A	Q3E841	98 aa		0.83	□□□□□ -2.28
SHE2	YKL130C	TOS6	P48560	102 aa		0.82	□□□□□ -2.28
SHE2	YKL130C	DDR2	P89113	61 aa		0.82	□□□□□ -2.28
SHE2	YKL130C	YCR095W-A	Q3E787	52 aa		0.82	□□□□□ -2.28
SHE2	YKL130C	YPL038W-A	Q3E7B4	63 aa		0.82	□□□□□ -2.28
SHE2	YKL130C	YGR121W-A	Q3E816	71 aa		0.82	□□□□□ -2.28
SHE2	YKL130C	YLR157W-E	P0CF00	54 aa		0.81	□□□□□ -2.28
SHE2	YKL130C	RSM19	P53733	91 aa	Predicted RBP	0.81	□□□□□ -2.28
SHE2	YKL130C	PAU17	Q12370	124 aa		0.81	□□□□□ -2.28
SHE2	YKL130C	YAL065C	O13511	128 aa		0.8	□□□□□ -2.28
SHE2	YKL130C	NHP2	P32495	156 aa	Predicted RBP	0.8	□□□□□ -2.28
SHE2	YKL130C	YHL005C	P38752	130 aa		0.8	□□□□□ -2.28
SHE2	YKL130C	YNL190W	P53872	204 aa		0.8	□□□□□ -2.28
SHE2	YKL130C	YNL042W-B	Q3E7Z2	85 aa		0.8	□□□□□ -2.28
SHE2	YKL130C	YLR255C	O13574	117 aa		0.79	□□□□□ -2.28
SHE2	YKL130C	RPL29	P05747	59 aa	Predicted RBP	0.79	□□□□□ -2.28
SHE2	YKL130C	YLR157W-D	P0CE99	70 aa		0.79	□□□□□ -2.28
SHE2	YKL130C	YDR210W	Q03482	75 aa		0.79	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 24.9 ms