RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	YLR307C-A	Q3E825	87 aa		2.68	□□□□□ -1.98
CAF16	YFL028C	ECM12	O13529	151 aa		2.67	□□□□□ -1.98
CAF16	YFL028C	ATP5	P09457	212 aa		2.67	□□□□□ -1.98
CAF16	YFL028C	HAP3	P13434	144 aa		2.67	□□□□□ -1.98
CAF16	YFL028C	MVB12	P42939	101 aa		2.67	□□□□□ -1.98
CAF16	YFL028C	YBL039W-B	P0C268	59 aa		2.66	□□□□□ -1.98
CAF16	YFL028C	YGL041C-B	Q3E750	60 aa		2.66	□□□□□ -1.98
CAF16	YFL028C	LCL1	Q02786	101 aa		2.65	□□□□□ -1.99
CAF16	YFL028C	YML079W	Q03629	201 aa		2.65	□□□□□ -1.99
CAF16	YFL028C	Q0032	Q9ZZX7	96 aa		2.65	□□□□□ -1.99
CAF16	YFL028C	RPL29	P05747	59 aa	Predicted RBP	2.64	□□□□□ -1.99
CAF16	YFL028C	AIM19	P40502	157 aa		2.64	□□□□□ -1.99
CAF16	YFL028C	SAE3	P89114	91 aa		2.64	□□□□□ -1.99
CAF16	YFL028C	PAU23	Q07987	124 aa		2.64	□□□□□ -1.99
CAF16	YFL028C	PAU17	Q12370	124 aa		2.64	□□□□□ -1.99
CAF16	YFL028C	YHL018W	P38744	120 aa	Predicted RBP	2.63	□□□□□ -1.99
CAF16	YFL028C	ELC1	Q03071	99 aa		2.63	□□□□□ -1.99
CAF16	YFL028C	HPA2	Q06592	156 aa		2.63	□□□□□ -1.99
CAF16	YFL028C	YKL023C-A	Q2V2P3	75 aa		2.63	□□□□□ -1.99
CAF16	YFL028C	RAD6	P06104	172 aa		2.62	□□□□□ -1.99
CAF16	YFL028C	UBC4	P15731	148 aa		2.62	□□□□□ -1.99
CAF16	YFL028C	YGL193C	P53097	103 aa		2.62	□□□□□ -1.99
CAF16	YFL028C	YLR162W	Q06235	118 aa		2.62	□□□□□ -1.99
CAF16	YFL028C	YLR363W-A	Q3E747	85 aa		2.62	□□□□□ -1.99
CAF16	YFL028C	COX8	P04039	78 aa		2.61	□□□□□ -1.99
CAF16	YFL028C	YHR007C-A	Q07074	71 aa		2.61	□□□□□ -1.99
CAF16	YFL028C	PBI2	P0CT04	75 aa	Known RBP	2.6	□□□□□ -1.99
CAF16	YFL028C	DDR48	P18899	430 aa	Known RBP	2.6	□□□□□ -1.99
CAF16	YFL028C	YHR130C	P38834	111 aa		2.6	□□□□□ -1.99
CAF16	YFL028C	IRC21	Q04772	201 aa		2.6	□□□□□ -1.99
CAF16	YFL028C	YER181C	P40097	107 aa		2.59	□□□□□ -1.99
CAF16	YFL028C	ICY1	Q04329	127 aa		2.59	□□□□□ -1.99
CAF16	YFL028C	YOR034C-A	Q3E735	80 aa		2.59	□□□□□ -1.99
CAF16	YFL028C	YBR230W-A	Q3E762	66 aa		2.59	□□□□□ -1.99
CAF16	YFL028C	PAI3	P01094	68 aa		2.58	□□□□□ -2
CAF16	YFL028C	GLC8	P41818	229 aa		2.58	□□□□□ -2
CAF16	YFL028C	YLR296W	Q05898	108 aa		2.58	□□□□□ -2
CAF16	YFL028C	YNL042W-B	Q3E7Z2	85 aa		2.58	□□□□□ -2
CAF16	YFL028C	POP7	P38291	140 aa		2.57	□□□□□ -2
CAF16	YFL028C	CWC27	Q02770	301 aa		2.57	□□□□□ -2
CAF16	YFL028C	LSM6	Q06406	86 aa	Known RBP	2.57	□□□□□ -2
CAF16	YFL028C	YJL127C-B	Q3E828	52 aa		2.57	□□□□□ -2
CAF16	YFL028C	YER039C-A	P0CD97	72 aa		2.56	□□□□□ -2
CAF16	YFL028C	NHP2	P32495	156 aa	Predicted RBP	2.56	□□□□□ -2
CAF16	YFL028C	DDR2	P89113	61 aa		2.56	□□□□□ -2
CAF16	YFL028C	YOR381W-A	Q3E804	55 aa		2.56	□□□□□ -2
CAF16	YFL028C	FYV5	P25585	152 aa		2.55	□□□□□ -2
CAF16	YFL028C	HUR1	P45820	110 aa		2.55	□□□□□ -2
CAF16	YFL028C	YIL102C-A	Q2V2P5	75 aa		2.55	□□□□□ -2
CAF16	YFL028C	MRPL24	P36525	258 aa	Predicted RBP	2.54	□□□□□ -2
CAF16	YFL028C	YGL149W	P53116	101 aa		2.54	□□□□□ -2
CAF16	YFL028C	HYP2	P23301	157 aa	Known RBP	2.53	□□□□□ -2
CAF16	YFL028C	YNL198C	P40166	100 aa		2.53	□□□□□ -2
CAF16	YFL028C	BSC4	P53841	131 aa		2.53	□□□□□ -2
CAF16	YFL028C	YDR010C	Q12426	110 aa		2.53	□□□□□ -2
CAF16	YFL028C	YGR121W-A	Q3E816	71 aa		2.53	□□□□□ -2
CAF16	YFL028C	SPG1	P50088	95 aa		2.52	□□□□□ -2.01
CAF16	YFL028C	LIP1	Q03579	150 aa		2.52	□□□□□ -2.01
CAF16	YFL028C	YOR072W	Q08486	104 aa		2.5	□□□□□ -2.01
CAF16	YFL028C	RPL36B	O14455	100 aa	Known RBP	2.49	□□□□□ -2.01
CAF16	YFL028C	SFT1	P43682	97 aa		2.49	□□□□□ -2.01
CAF16	YFL028C	YJR107C-A	P0CT86	78 aa		2.47	□□□□□ -2.01
CAF16	YFL028C	YBR027C	P38220	110 aa		2.47	□□□□□ -2.01
CAF16	YFL028C	ATP18	P81450	59 aa		2.46	□□□□□ -2.02
CAF16	YFL028C	YFR009W-A	P0C5M9	85 aa		2.45	□□□□□ -2.02
CAF16	YFL028C	RSM18	P40033	138 aa		2.45	□□□□□ -2.02
CAF16	YFL028C	KTI11	Q3E840	82 aa		2.45	□□□□□ -2.02
CAF16	YFL028C	YJL197C-A	P0C5P0	93 aa		2.44	□□□□□ -2.02
CAF16	YFL028C	KSH1	Q8TGJ3	72 aa		2.43	□□□□□ -2.02
CAF16	YFL028C	RPA12	P32529	125 aa	Known RBP	2.42	□□□□□ -2.02
CAF16	YFL028C	ICS3	P47034	131 aa		2.42	□□□□□ -2.02
CAF16	YFL028C	RSM19	P53733	91 aa	Predicted RBP	2.42	□□□□□ -2.02
CAF16	YFL028C	YHR213W-B	Q8TGK1	99 aa		2.42	□□□□□ -2.02
CAF16	YFL028C	INO4	P13902	151 aa		2.41	□□□□□ -2.02
CAF16	YFL028C	YJL133C-A	Q3E7A3	74 aa		2.41	□□□□□ -2.02
CAF16	YFL028C	YHL042W	P38729	150 aa		2.4	□□□□□ -2.03
CAF16	YFL028C	EDC1	P53080	175 aa	Predicted RBP	2.4	□□□□□ -2.03
CAF16	YFL028C	YDR381C-A	Q3E6R5	114 aa		2.4	□□□□□ -2.03
CAF16	YFL028C	MIC10	Q96VH5	97 aa		2.4	□□□□□ -2.03
CAF16	YFL028C	YLR157W-D	P0CE99	70 aa		2.39	□□□□□ -2.03
CAF16	YFL028C	COX23	P38824	151 aa		2.39	□□□□□ -2.03
CAF16	YFL028C	YHL005C	P38752	130 aa		2.38	□□□□□ -2.03
CAF16	YFL028C	YOL097W-A	Q3E7Y9	61 aa		2.38	□□□□□ -2.03
CAF16	YFL028C	RPL38	P49167	78 aa	Known RBP	2.37	□□□□□ -2.03
CAF16	YFL028C	CMC4	Q3E7A9	73 aa		2.37	□□□□□ -2.03
CAF16	YFL028C	YFL065C	P43539	102 aa		2.36	□□□□□ -2.03
CAF16	YFL028C	YCR085W	P25650	117 aa		2.35	□□□□□ -2.03
CAF16	YFL028C	TDA2	P40045	126 aa		2.35	□□□□□ -2.03
CAF16	YFL028C	COF1	Q03048	143 aa	Known RBP	2.35	□□□□□ -2.03
CAF16	YFL028C	ATX1	P38636	73 aa		2.34	□□□□□ -2.03
CAF16	YFL028C	YNL122C	P53921	115 aa	Predicted RBP	2.33	□□□□□ -2.04
CAF16	YFL028C	COX7	P10174	60 aa		2.32	□□□□□ -2.04
CAF16	YFL028C	YCR050C	P25630	102 aa		2.31	□□□□□ -2.04
CAF16	YFL028C	YEL014C	P39999	101 aa		2.3	□□□□□ -2.04
CAF16	YFL028C	RPL37B	P51402	88 aa	Known RBP	2.3	□□□□□ -2.04
CAF16	YFL028C	YGR039W	P53225	103 aa		2.3	□□□□□ -2.04
CAF16	YFL028C	YHR073W-A	P0C5N7	58 aa		2.29	□□□□□ -2.04
CAF16	YFL028C	YAR064W	P39563	99 aa		2.29	□□□□□ -2.04
CAF16	YFL028C	YOR304C-A	O14468	76 aa		2.28	□□□□□ -2.04
CAF16	YFL028C	RPL36A	P05745	100 aa	Predicted RBP	2.28	□□□□□ -2.04

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