RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 MRPL9Q9BYD2 267 aaKnown RBP10.84□□□□□ -0.67
LIG1-220ENST00000601091 SNX25Q9H3E2 840 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 MYOZ2Q9NPC6 264 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 AKT3Q9Y243 479 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 FBXO21O94952 628 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 NQO1P15559 274 aaKnown RBP10.84□□□□□ -0.67
LIG1-220ENST00000601091 CCND1P24385 295 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 WDR72Q3MJ13 1102 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 GPAT2Q6NUI2 795 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 C3orf62Q6ZUJ4 267 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 VCPIP1Q96JH7 1222 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 KLC2Q9H0B6 622 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 UBIAD1Q9Y5Z9 338 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 ARHGAP42A6NI28 874 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 A8MUI8 341 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 O00370 1275 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 CST8O60676 142 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 LPXNO60711 386 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 MMP13P45452 471 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 BAG6P46379 1132 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 CCT8P50990 548 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 ARFIP2P53365 341 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 EIF3EP60228 445 aaKnown RBP10.83□□□□□ -0.68
LIG1-220ENST00000601091 PDE1BQ01064 536 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 RCN2Q14257 317 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 TCEAL1Q15170 157 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 ATG16L1Q676U5 607 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 SPOPLQ6IQ16 392 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 IFNL1Q8IU54 200 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 TMEM161BQ8NDZ6 487 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 ATXN2LQ8WWM7 1075 aaKnown RBP10.83□□□□□ -0.68
LIG1-220ENST00000601091 ALKBH8Q96BT7 664 aaKnown RBP10.83□□□□□ -0.68
LIG1-220ENST00000601091 PCDHB18PQ96TA0 734 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 WDR35Q9P2L0 1181 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 TRIM33Q9UPN9 1127 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 HEY1Q9Y5J3 304 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 FSCN2O14926 492 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 TBC1D12O60347 775 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 HAUS5O94927 633 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 WEE2P0C1S8 567 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 GSTT2P0CG29 244 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 GSTT2BP0CG30 244 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 RXRBP28702 533 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 GNA13Q14344 377 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 CNGA2Q16280 664 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 FKBP1CQ5VVH2 108 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 TUBA3EQ6PEY2 450 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 AGGF1Q8N302 714 aaeCLIP10.83□□□□□ -0.68
LIG1-220ENST00000601091 PIP4K2CQ8TBX8 421 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 LZICQ8WZA0 190 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 NIF3L1Q9GZT8 377 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 KIAA1683Q9H0B3 1180 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 PIDD1Q9HB75 910 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 CHST12Q9NRB3 414 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 POLG2Q9UHN1 485 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 BHMG1C9JSJ3 638 aaPredicted RBP10.83□□□□□ -0.68
LIG1-220ENST00000601091 GOLGA8RI6L899 631 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 ZWINTO95229 277 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 BAG2O95816 211 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 LMNAP02545 664 aaKnown RBP10.83□□□□□ -0.68
LIG1-220ENST00000601091 PRKCBP05771 671 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 RFC5P40937 340 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 TMPRSS15P98073 1019 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 C1QBPQ07021 282 aaKnown RBP10.83□□□□□ -0.68
LIG1-220ENST00000601091 PDAP1Q13442 181 aaKnown RBP10.83□□□□□ -0.68
LIG1-220ENST00000601091 PTK6Q13882 451 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 FAM102AQ5T9C2 384 aaPredicted RBP10.83□□□□□ -0.68
LIG1-220ENST00000601091 ZNF554Q86TJ5 538 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 ZC3H18Q86VM9 953 aaKnown RBP10.83□□□□□ -0.68
LIG1-220ENST00000601091 PPM1NQ8N819 430 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 C7orf31Q8N865 590 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 IL31RAQ8NI17 732 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 MAML1Q92585 1016 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 HIC2Q96JB3 615 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 ZNF668Q96K58 619 aaPredicted RBP10.83□□□□□ -0.68
LIG1-220ENST00000601091 KREMEN1Q96MU8 473 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 TMCO1Q9UM00 188 aa10.83□□□□□ -0.68
LIG1-220ENST00000601091 LYPLA2O95372 231 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 ANP32DO95626 131 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 ALAS2P22557 587 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 PTGS2P35354 604 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 NAMPTP43490 491 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 PPM1FP49593 454 aaPredicted RBP10.82□□□□□ -0.68
LIG1-220ENST00000601091 CDH6P55285 790 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 KCNJ2P63252 427 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 MCL1Q07820 350 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 RRP1BQ14684 758 aaKnown RBP10.82□□□□□ -0.68
LIG1-220ENST00000601091 CYTH1Q15438 398 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 BOLA3Q53S33 107 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 PPP6R3Q5H9R7 873 aaPredicted RBP10.82□□□□□ -0.68
LIG1-220ENST00000601091 SEPT1Q8WYJ6 367 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 PCMTD2Q9NV79 361 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 A6NCN8 305 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 NOTOA8MTQ0 251 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 M0QYV0 167 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 SNX3O60493 162 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 PLA2G6O60733 806 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 GLULP15104 373 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 HADHBP55084 474 aaKnown RBP10.82□□□□□ -0.68
LIG1-220ENST00000601091 GJA9P57773 515 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms