RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 MON1AQ86VX9 555 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 FAM71AQ8IYT1 594 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 CMTM8Q8IZV2 173 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 ELMOD1Q8N336 334 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 PLCD3Q8N3E9 789 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 LEMD2Q8NC56 503 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 SLC35F5Q8WV83 523 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 EDAQ92838 391 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 SMARCD2Q92925 531 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 ACSF2Q96CM8 615 aaPredicted RBP9.74□□□□□ -0.85
VPS35-206ENST00000565228 PIWIL1Q96J94 861 aaKnown RBP9.74□□□□□ -0.85
VPS35-206ENST00000565228 C1QTNF1Q9BXJ1 281 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 CCSER2Q9H7U1 834 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 PLCB1Q9NQ66 1216 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 DUSP12Q9UNI6 340 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 SORCS3Q9UPU3 1222 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 ATG2BQ96BY7 2078 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 ZFHX4Q86UP3 3567 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 A0A1B0GTH6 734 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 A0A1W2PQH9 124 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 COCHO43405 550 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 FYNP06241 537 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 USP17L7P0C7H9 530 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 YWHAQP27348 245 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 CDC25CP30307 473 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 RPL34P49207 117 aaKnown RBP9.73□□□□□ -0.85
VPS35-206ENST00000565228 TNK2Q07912 1038 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 NR1I3Q14994 352 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 ZNF77Q15935 545 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 GAB4Q2WGN9 574 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 SGO2Q562F6 1265 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 SNX30Q5VWJ9 437 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 CWF19L1Q69YN2 538 aaKnown RBP9.73□□□□□ -0.85
VPS35-206ENST00000565228 TRIM68Q6AZZ1 485 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 TRIM67Q6ZTA4 783 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 NOP9Q86U38 636 aaKnown RBP9.73□□□□□ -0.85
VPS35-206ENST00000565228 ZNF687Q8N1G0 1237 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 SLC20A1Q8WUM9 679 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 ZNF606Q8WXB4 792 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 BAP1Q92560 729 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 FBXO32Q969P5 355 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 ELSPBP1Q96BH3 223 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 ERGIC2Q96RQ1 377 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 ULBP1Q9BZM6 244 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 TTYH3Q9C0H2 523 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 TRPC7Q9HCX4 862 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 HPS4Q9NQG7 708 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 FAM207AQ9NSI2 230 aaPredicted RBP9.73□□□□□ -0.85
VPS35-206ENST00000565228 IGSF9Q9P2J2 1179 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 HCN4Q9Y3Q4 1203 aa9.73□□□□□ -0.85
VPS35-206ENST00000565228 MTF2Q9Y483 593 aaPredicted RBP9.73□□□□□ -0.85
VPS35-206ENST00000565228 MIA3Q5JRA6 1907 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 YJEFN3A6XGL0 299 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 E7ENQ6 273 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 F8VZ95 297 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 XPO1O14980 1071 aaKnown RBP9.72□□□□□ -0.85
VPS35-206ENST00000565228 PI15O43692 258 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 LETM1O95202 739 aaPredicted RBP9.72□□□□□ -0.85
VPS35-206ENST00000565228 KRT5P13647 590 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 ANXA13P27216 316 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 WEE1P30291 646 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 HOXC13P31276 330 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 PLA2G4AP47712 749 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 SOX9P48436 509 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 MFAP3P55082 362 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 POLR2FP61218 127 aaKnown RBP9.72□□□□□ -0.85
VPS35-206ENST00000565228 FCHO2Q0JRZ9 810 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 CETN1Q12798 172 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 USP4Q13107 963 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 SKOR2Q2VWA4 1001 aaPredicted RBP9.72□□□□□ -0.85
VPS35-206ENST00000565228 PM20D1Q6GTS8 502 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 TXNDC11Q6PKC3 985 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 LRSAM1Q6UWE0 723 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 PASD1Q8IV76 773 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 MFSD6LQ8IWD5 586 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 TTC8Q8TAM2 541 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 CEP295NLQ96MC4 621 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 PCDHB18PQ96TA0 734 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 LRFN3Q9BTN0 628 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 ADAM33Q9BZ11 813 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 LINC00597Q9H2U6 94 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 FAM124BQ9H5Z6 455 aaPredicted RBP9.72□□□□□ -0.85
VPS35-206ENST00000565228 ZFP14Q9HCL3 533 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 NLRC4Q9NPP4 1024 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 SLC2A4RGQ9NR83 387 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 GKN1Q9NS71 199 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 NOCTQ9UK39 431 aaKnown RBP9.72□□□□□ -0.85
VPS35-206ENST00000565228 SCML2Q9UQR0 700 aa9.72□□□□□ -0.85
VPS35-206ENST00000565228 ZFP37Q9Y6Q3 630 aaPredicted RBP9.72□□□□□ -0.85
VPS35-206ENST00000565228 TMEM221A6NGB7 291 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 M0QYV0 167 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 M0R296 226 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 PES1O00541 588 aaKnown RBP9.71□□□□□ -0.86
VPS35-206ENST00000565228 RTN3O95197 1032 aaPredicted RBP9.71□□□□□ -0.86
VPS35-206ENST00000565228 SRFP11831 508 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 GLULP15104 373 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 ARSAP15289 507 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 CD72P21854 359 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 GNA15P30679 374 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 GDI1P31150 447 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms