RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 BHLHA9Q7RTU4 235 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 DDX53Q86TM3 631 aaKnown RBP19.51■□□□□ 0.71
CLN3-206ENST00000360019 RHOT1Q8IXI2 618 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 RASGEF1CQ8N431 466 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 CHD9Q3L8U1 2897 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 WDR27A2RRH5 827 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 TNFRSF10BO14763 440 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 PSTPIP1O43586 416 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 TADA3O75528 432 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 FBXO21O94952 628 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 USP17L7P0C7H9 530 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 SSR1P43307 286 aaKnown RBP19.51■□□□□ 0.71
CLN3-206ENST00000360019 GLUD2P49448 558 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 GPR15P49685 360 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 RWDD2BP57060 319 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 ROR1Q01973 937 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 RAB6CQ53S08 254 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 CCDC181Q5TID7 509 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 HFE2Q6ZVN8 426 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 ZNF572Q7Z3I7 529 aaPredicted RBP19.51■□□□□ 0.71
CLN3-206ENST00000360019 SCN4BQ8IWT1 228 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 ACTRT1Q8TDG2 376 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 FAM149B1Q96BN6 582 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 RAB6CQ9H0N0 254 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 AAASQ9NRG9 546 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 RNF14Q9UBS8 474 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 PCDHB12Q9Y5F1 795 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 USP3Q9Y6I4 520 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 CCDC85CA6NKD9 419 aa19.5■□□□□ 0.71
CLN3-206ENST00000360019 YJEFN3A6XGL0 299 aa19.5■□□□□ 0.71
CLN3-206ENST00000360019 E7ENQ6 273 aa19.5■□□□□ 0.71
CLN3-206ENST00000360019 TLL1O43897 1013 aa19.5■□□□□ 0.71
CLN3-206ENST00000360019 HSF2BPO75031 334 aa19.5■□□□□ 0.71
CLN3-206ENST00000360019 FGF18O76093 207 aa19.5■□□□□ 0.71
CLN3-206ENST00000360019 ZBED1O96006 694 aa19.5■□□□□ 0.71
CLN3-206ENST00000360019 PYGMP11217 842 aa19.5■□□□□ 0.71
CLN3-206ENST00000360019 MAGEA11P43364 429 aa19.5■□□□□ 0.71
CLN3-206ENST00000360019 SLC5A3P53794 718 aa19.5■□□□□ 0.71
CLN3-206ENST00000360019 DDR2Q16832 855 aa19.5■□□□□ 0.71
CLN3-206ENST00000360019 TXNRD3NBQ6F5E7 133 aa19.5■□□□□ 0.71
CLN3-206ENST00000360019 SCAMP5Q8TAC9 235 aa19.5■□□□□ 0.71
CLN3-206ENST00000360019 RNPC3Q96LT9 517 aaKnown RBP19.5■□□□□ 0.71
CLN3-206ENST00000360019 CLSTN3Q9BQT9 956 aa19.5■□□□□ 0.71
CLN3-206ENST00000360019 C11orf84Q9BUA3 381 aaPredicted RBP19.5■□□□□ 0.71
CLN3-206ENST00000360019 ADAM33Q9BZ11 813 aa19.5■□□□□ 0.71
CLN3-206ENST00000360019 ASNSD1Q9NWL6 643 aa19.5■□□□□ 0.71
CLN3-206ENST00000360019 CTAGE15A4D2H0 777 aa19.49■□□□□ 0.71
CLN3-206ENST00000360019 CTAGE8P0CG41 777 aa19.49■□□□□ 0.71
CLN3-206ENST00000360019 TFE3P19532 575 aaPredicted RBP19.49■□□□□ 0.71
CLN3-206ENST00000360019 SDC4P31431 198 aa19.49■□□□□ 0.71
CLN3-206ENST00000360019 OR1D2P34982 312 aa19.49■□□□□ 0.71
CLN3-206ENST00000360019 GTF2F1P35269 517 aaKnown RBP eCLIP19.49■□□□□ 0.71
CLN3-206ENST00000360019 GJC1P36383 396 aa19.49■□□□□ 0.71
CLN3-206ENST00000360019 YWHAZP63104 245 aaKnown RBP19.49■□□□□ 0.71
CLN3-206ENST00000360019 SLC25A11Q02978 314 aaKnown RBP19.49■□□□□ 0.71
CLN3-206ENST00000360019 SMARCB1Q12824 385 aa19.49■□□□□ 0.71
CLN3-206ENST00000360019 ACAP1Q15027 740 aa19.49■□□□□ 0.71
CLN3-206ENST00000360019 CDO1Q16878 200 aa19.49■□□□□ 0.71
CLN3-206ENST00000360019 SDHAF4Q5VUM1 108 aa19.49■□□□□ 0.71
CLN3-206ENST00000360019 PM20D1Q6GTS8 502 aa19.49■□□□□ 0.71
CLN3-206ENST00000360019 CTAGE6Q86UF2 777 aa19.49■□□□□ 0.71
CLN3-206ENST00000360019 CTAGE4Q8IX94 777 aa19.49■□□□□ 0.71
CLN3-206ENST00000360019 VPS52Q8N1B4 723 aa19.49■□□□□ 0.71
CLN3-206ENST00000360019 SPPL2BQ8TCT7 592 aa19.49■□□□□ 0.71
CLN3-206ENST00000360019 C8orf48Q96LL4 319 aa19.49■□□□□ 0.71
CLN3-206ENST00000360019 MTIF3Q9H2K0 278 aaKnown RBP19.49■□□□□ 0.71
CLN3-206ENST00000360019 SLC27A5Q9Y2P5 690 aa19.49■□□□□ 0.71
CLN3-206ENST00000360019 CTIFO43310 598 aaKnown RBP19.48■□□□□ 0.71
CLN3-206ENST00000360019 DAB1O75553 588 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 SOAT2O75908 522 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 GLI1P08151 1106 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 IL1R2P27930 398 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 PAFAH1B1P43034 410 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 PTPN9P43378 593 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 TERF1P54274 439 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 ATP11AP98196 1134 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 ATP13A4Q4VNC1 1196 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 C9orf50Q5SZB4 431 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 LRRC38Q5VT99 294 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 DEFB106AQ8N104 65 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 STKLD1Q8NE28 680 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 SLC2A13Q96QE2 648 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 DDX23Q9BUQ8 820 aaKnown RBP19.48■□□□□ 0.71
CLN3-206ENST00000360019 TTC7AQ9ULT0 858 aaPredicted RBP19.48■□□□□ 0.71
CLN3-206ENST00000360019 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.48■□□□□ 0.71
CLN3-206ENST00000360019 TRIM66O15016 1216 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 RNF8O76064 485 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 URODP06132 367 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 FYNP06241 537 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 MIPP30301 263 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 PCK1P35558 622 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 MATKP42679 507 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 KATNAL2Q8IYT4 538 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 SCML4Q8N228 414 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 KLHL23Q8NBE8 558 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 SPATA4Q8NEY3 305 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 C2orf15Q8WU43 125 aaKnown RBP19.48■□□□□ 0.71
CLN3-206ENST00000360019 FAM172AQ8WUF8 416 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 AUTS2Q8WXX7 1259 aa19.48■□□□□ 0.71
CLN3-206ENST00000360019 POPDC2Q9HBU9 364 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 158 ms