RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 DMWDQ09019 674 aa18.8■□□□□ 0.6
HDDC3-201ENST00000330334 HECTD3Q5T447 861 aa18.8■□□□□ 0.6
HDDC3-201ENST00000330334 KRT39Q6A163 491 aa18.8■□□□□ 0.6
HDDC3-201ENST00000330334 CCDC150Q8NCX0 1101 aa18.8■□□□□ 0.6
HDDC3-201ENST00000330334 ZMIZ2Q8NF64 920 aa18.8■□□□□ 0.6
HDDC3-201ENST00000330334 SLC2A14Q8TDB8 520 aa18.8■□□□□ 0.6
HDDC3-201ENST00000330334 TIGD1Q96MW7 591 aa18.8■□□□□ 0.6
HDDC3-201ENST00000330334 SMOQ99835 787 aa18.8■□□□□ 0.6
HDDC3-201ENST00000330334 NT5C1AQ9BXI3 368 aa18.8■□□□□ 0.6
HDDC3-201ENST00000330334 DNAI2Q9GZS0 605 aa18.8■□□□□ 0.6
HDDC3-201ENST00000330334 KRT82Q9NSB4 513 aa18.8■□□□□ 0.6
HDDC3-201ENST00000330334 TBC1D14Q9P2M4 693 aa18.8■□□□□ 0.6
HDDC3-201ENST00000330334 HMGXB4Q9UGU5 601 aa18.8■□□□□ 0.6
HDDC3-201ENST00000330334 CHORDC1Q9UHD1 332 aaPredicted RBP18.8■□□□□ 0.6
HDDC3-201ENST00000330334 GMEB2Q9UKD1 530 aa18.8■□□□□ 0.6
HDDC3-201ENST00000330334 E2F8A0AVK6 867 aa18.79■□□□□ 0.6
HDDC3-201ENST00000330334 CETN3O15182 167 aa18.79■□□□□ 0.6
HDDC3-201ENST00000330334 COCHO43405 550 aa18.79■□□□□ 0.6
HDDC3-201ENST00000330334 STX10O60499 249 aa18.79■□□□□ 0.6
HDDC3-201ENST00000330334 RNF40O75150 1001 aa18.79■□□□□ 0.6
HDDC3-201ENST00000330334 RETP07949 1114 aa18.79■□□□□ 0.6
HDDC3-201ENST00000330334 TRIM49P0CI25 452 aa18.79■□□□□ 0.6
HDDC3-201ENST00000330334 TRIM49CP0CI26 452 aa18.79■□□□□ 0.6
HDDC3-201ENST00000330334 CCDC130P13994 396 aa18.79■□□□□ 0.6
HDDC3-201ENST00000330334 PNOCQ13519 176 aa18.79■□□□□ 0.6
HDDC3-201ENST00000330334 SIM2Q14190 667 aaPredicted RBP18.79■□□□□ 0.6
HDDC3-201ENST00000330334 ZNF658Q5TYW1 1059 aaPredicted RBP18.79■□□□□ 0.6
HDDC3-201ENST00000330334 PKN3Q6P5Z2 889 aa18.79■□□□□ 0.6
HDDC3-201ENST00000330334 SYT13Q7L8C5 426 aa18.79■□□□□ 0.6
HDDC3-201ENST00000330334 FILIP1Q7Z7B0 1213 aa18.79■□□□□ 0.6
HDDC3-201ENST00000330334 ELOA2Q8IYF1 753 aaPredicted RBP18.79■□□□□ 0.6
HDDC3-201ENST00000330334 TTC39CQ8N584 583 aa18.79■□□□□ 0.6
HDDC3-201ENST00000330334 C12orf29Q8N999 325 aa18.79■□□□□ 0.6
HDDC3-201ENST00000330334 TTC16Q8NEE8 873 aa18.79■□□□□ 0.6
HDDC3-201ENST00000330334 OTUB2Q96DC9 234 aa18.79■□□□□ 0.6
HDDC3-201ENST00000330334 NIF3L1Q9GZT8 377 aa18.79■□□□□ 0.6
HDDC3-201ENST00000330334 PNPLA8Q9NP80 782 aa18.79■□□□□ 0.6
HDDC3-201ENST00000330334 SLC8A2Q9UPR5 921 aa18.79■□□□□ 0.6
HDDC3-201ENST00000330334 CILPO75339 1184 aa18.78■□□□□ 0.6
HDDC3-201ENST00000330334 BEST1O76090 585 aa18.78■□□□□ 0.6
HDDC3-201ENST00000330334 SMC2O95347 1197 aa18.78■□□□□ 0.6
HDDC3-201ENST00000330334 FAM200BP0CF97 657 aa18.78■□□□□ 0.6
HDDC3-201ENST00000330334 EPB41P11171 864 aaKnown RBP18.78■□□□□ 0.6
HDDC3-201ENST00000330334 MBL2P11226 248 aaPredicted RBP18.78■□□□□ 0.6
HDDC3-201ENST00000330334 SDHBP21912 280 aa18.78■□□□□ 0.6
HDDC3-201ENST00000330334 EIF2DP41214 584 aaKnown RBP18.78■□□□□ 0.6
HDDC3-201ENST00000330334 PRCPP42785 496 aa18.78■□□□□ 0.6
HDDC3-201ENST00000330334 IFRD2Q12894 506 aaPredicted RBP18.78■□□□□ 0.6
HDDC3-201ENST00000330334 GAB4Q2WGN9 574 aa18.78■□□□□ 0.6
HDDC3-201ENST00000330334 NAIF1Q69YI7 327 aaPredicted RBP18.78■□□□□ 0.6
HDDC3-201ENST00000330334 ZC3H3Q8IXZ2 948 aaKnown RBP18.78■□□□□ 0.6
HDDC3-201ENST00000330334 SMYD4Q8IYR2 804 aaPredicted RBP18.78■□□□□ 0.6
HDDC3-201ENST00000330334 EZH1Q92800 747 aaPredicted RBP18.78■□□□□ 0.6
HDDC3-201ENST00000330334 RMDN1Q96DB5 314 aa18.78■□□□□ 0.6
HDDC3-201ENST00000330334 CYFIP2Q96F07 1278 aa18.78■□□□□ 0.6
HDDC3-201ENST00000330334 ZFRQ96KR1 1074 aaKnown RBP18.78■□□□□ 0.6
HDDC3-201ENST00000330334 SMPD4Q9NXE4 827 aa18.78■□□□□ 0.6
HDDC3-201ENST00000330334 DLL3Q9NYJ7 618 aa18.78■□□□□ 0.6
HDDC3-201ENST00000330334 CFAP97Q9P2B7 532 aa18.78■□□□□ 0.6
HDDC3-201ENST00000330334 HOOK1Q9UJC3 728 aaKnown RBP18.78■□□□□ 0.6
HDDC3-201ENST00000330334 A0A0A0MRY4 1105 aa18.77■□□□□ 0.6
HDDC3-201ENST00000330334 PRR5-ARHGAP8B1AHC4 643 aa18.77■□□□□ 0.6
HDDC3-201ENST00000330334 OPRD1P41143 372 aa18.77■□□□□ 0.6
HDDC3-201ENST00000330334 MAP3K7CLP57077 242 aa18.77■□□□□ 0.6
HDDC3-201ENST00000330334 ARHGAP8P85298 464 aa18.77■□□□□ 0.6
HDDC3-201ENST00000330334 FKBP3Q00688 224 aaKnown RBP18.77■□□□□ 0.6
HDDC3-201ENST00000330334 PUM1Q14671 1186 aaKnown RBP eCLIP18.77■□□□□ 0.6
HDDC3-201ENST00000330334 DHCR24Q15392 516 aa18.77■□□□□ 0.6
HDDC3-201ENST00000330334 HEATR6Q6AI08 1181 aaKnown RBP18.77■□□□□ 0.6
HDDC3-201ENST00000330334 FBXL13Q8NEE6 735 aa18.77■□□□□ 0.6
HDDC3-201ENST00000330334 WHAMMQ8TF30 809 aa18.77■□□□□ 0.6
HDDC3-201ENST00000330334 ACDQ96AP0 544 aa18.77■□□□□ 0.6
HDDC3-201ENST00000330334 TWNKQ96RR1 684 aa18.77■□□□□ 0.6
HDDC3-201ENST00000330334 TLR8Q9NR97 1041 aaKnown RBP18.77■□□□□ 0.6
HDDC3-201ENST00000330334 RAB20Q9NX57 234 aa18.77■□□□□ 0.6
HDDC3-201ENST00000330334 SCML2Q9UQR0 700 aa18.77■□□□□ 0.6
HDDC3-201ENST00000330334 PCDHA5Q9Y5H7 936 aa18.77■□□□□ 0.6
HDDC3-201ENST00000330334 DNAH14Q0VDD8 3507 aa18.77■□□□□ 0.6
HDDC3-201ENST00000330334 HHLA1C9JL84 531 aa18.76■□□□□ 0.59
HDDC3-201ENST00000330334 SLC16A3O15427 465 aaKnown RBP18.76■□□□□ 0.59
HDDC3-201ENST00000330334 ADH1CP00326 375 aa18.76■□□□□ 0.59
HDDC3-201ENST00000330334 CYP17A1P05093 508 aa18.76■□□□□ 0.59
HDDC3-201ENST00000330334 LMNB2Q03252 620 aa18.76■□□□□ 0.59
HDDC3-201ENST00000330334 ORC1Q13415 861 aa18.76■□□□□ 0.59
HDDC3-201ENST00000330334 RHBDF2Q6PJF5 856 aa18.76■□□□□ 0.59
HDDC3-201ENST00000330334 PRR23BQ6ZRT6 265 aa18.76■□□□□ 0.59
HDDC3-201ENST00000330334 CLEC20AQ6ZU45 233 aa18.76■□□□□ 0.59
HDDC3-201ENST00000330334 GAB3Q8WWW8 586 aa18.76■□□□□ 0.59
HDDC3-201ENST00000330334 TSG101Q99816 390 aa18.76■□□□□ 0.59
HDDC3-201ENST00000330334 CYLDQ9NQC7 956 aa18.76■□□□□ 0.59
HDDC3-201ENST00000330334 FAM49BQ9NUQ9 324 aa18.76■□□□□ 0.59
HDDC3-201ENST00000330334 GMIPQ9P107 970 aa18.76■□□□□ 0.59
HDDC3-201ENST00000330334 EBF1Q9UH73 591 aa18.76■□□□□ 0.59
HDDC3-201ENST00000330334 COQ4Q9Y3A0 265 aa18.76■□□□□ 0.59
HDDC3-201ENST00000330334 HELZP42694 1942 aaKnown RBP18.75■□□□□ 0.59
HDDC3-201ENST00000330334 K7EQS6 105 aa18.75■□□□□ 0.59
HDDC3-201ENST00000330334 MXI1P50539 228 aa18.75■□□□□ 0.59
HDDC3-201ENST00000330334 LRRC63Q05C16 580 aa18.75■□□□□ 0.59
HDDC3-201ENST00000330334 KLHDC10Q6PID8 442 aa18.75■□□□□ 0.59
HDDC3-201ENST00000330334 ZNF276Q8N554 614 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms