RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W YLR161WP0CE98 114 aa3.19□□□□□ -1.9
SSH4YKL124W RPR2P40571 144 aa3.19□□□□□ -1.9
SSH4YKL124W ATP19P81451 68 aa3.19□□□□□ -1.9
SSH4YKL124W YCR085WP25650 117 aa3.19□□□□□ -1.9
SSH4YKL124W MIX23P38162 196 aa3.19□□□□□ -1.9
SSH4YKL124W YMR141CP40211 102 aa3.19□□□□□ -1.9
SSH4YKL124W YJL028WP47062 111 aa3.19□□□□□ -1.9
SSH4YKL124W BRP1P53194 125 aa3.19□□□□□ -1.9
SSH4YKL124W DAD1Q12248 94 aa3.19□□□□□ -1.9
SSH4YKL124W YGR240C-AQ3E786 66 aa3.19□□□□□ -1.9
SSH4YKL124W YOR020W-AQ3E824 90 aa3.19□□□□□ -1.9
SSH4YKL124W YIL134C-AQ45U18 67 aa3.19□□□□□ -1.9
SSH4YKL124W YOL085CQ99345 113 aa3.19□□□□□ -1.9
SSH4YKL124W YAR023CD6VPM8 179 aa3.18□□□□□ -1.9
SSH4YKL124W YHL042WP38729 150 aa3.18□□□□□ -1.9
SSH4YKL124W KNH1P50112 268 aa3.18□□□□□ -1.9
SSH4YKL124W DAD4P69851 72 aa3.18□□□□□ -1.9
SSH4YKL124W CUE4Q04201 117 aaPredicted RBP3.18□□□□□ -1.9
SSH4YKL124W TDA2P40045 126 aa3.17□□□□□ -1.9
SSH4YKL124W THG1P53215 237 aaKnown RBP3.17□□□□□ -1.9
SSH4YKL124W HHF1P02309 103 aaKnown RBP3.16□□□□□ -1.9
SSH4YKL124W MID2P36027 376 aa3.16□□□□□ -1.9
SSH4YKL124W RRT13P40042 185 aa3.16□□□□□ -1.9
SSH4YKL124W SPG1P50088 95 aa3.16□□□□□ -1.9
SSH4YKL124W YOR105WQ08504 108 aa3.16□□□□□ -1.9
SSH4YKL124W ATP20Q12233 115 aa3.16□□□□□ -1.9
SSH4YKL124W YBR200W-AQ3E755 54 aa3.16□□□□□ -1.9
SSH4YKL124W COA6Q3E846 104 aa3.16□□□□□ -1.9
SSH4YKL124W YEL045CP32616 141 aa3.16□□□□□ -1.9
SSH4YKL124W YKL044WP36092 106 aa3.16□□□□□ -1.9
SSH4YKL124W YHL018WP38744 120 aaPredicted RBP3.16□□□□□ -1.9
SSH4YKL124W HUA1P40325 198 aa3.16□□□□□ -1.9
SSH4YKL124W YIL163CP40448 117 aa3.16□□□□□ -1.9
SSH4YKL124W SPC1P46965 94 aa3.16□□□□□ -1.9
SSH4YKL124W PCC1Q3E833 88 aa3.16□□□□□ -1.9
SSH4YKL124W KRE9P39005 276 aa3.15□□□□□ -1.91
SSH4YKL124W CRC1Q12289 327 aa3.15□□□□□ -1.91
SSH4YKL124W DFM1Q12743 341 aaKnown RBP3.15□□□□□ -1.91
SSH4YKL124W VMA9Q3E7B6 73 aa3.15□□□□□ -1.91
SSH4YKL124W POR1P04840 283 aaKnown RBP3.14□□□□□ -1.91
SSH4YKL124W SVP26P38869 228 aa3.14□□□□□ -1.91
SSH4YKL124W YNL217WP40152 326 aa3.14□□□□□ -1.91
SSH4YKL124W RSM19P53733 91 aaPredicted RBP3.14□□□□□ -1.91
SSH4YKL124W YLR296WQ05898 108 aa3.14□□□□□ -1.91
SSH4YKL124W NAT5Q08689 176 aa3.14□□□□□ -1.91
SSH4YKL124W YNR034W-AQ3E841 98 aa3.14□□□□□ -1.91
SSH4YKL124W SCS22Q6Q595 175 aa3.14□□□□□ -1.91
SSH4YKL124W YJR085CP47131 105 aaKnown RBP3.13□□□□□ -1.91
SSH4YKL124W GIS2P53849 153 aaKnown RBP RIP-Chip data3.13□□□□□ -1.91not detected
SSH4YKL124W ENV10Q99382 181 aa3.13□□□□□ -1.91
SSH4YKL124W FZF1P32805 299 aa3.13□□□□□ -1.91
SSH4YKL124W BNS1P50084 137 aa3.13□□□□□ -1.91
SSH4YKL124W YDR042CQ03205 200 aa3.13□□□□□ -1.91
SSH4YKL124W SMT3Q12306 101 aaKnown RBP3.13□□□□□ -1.91
SSH4YKL124W MRPL31P14063 131 aaPredicted RBP3.12□□□□□ -1.91
SSH4YKL124W RPA12P32529 125 aaKnown RBP3.12□□□□□ -1.91
SSH4YKL124W ATX1P38636 73 aa3.12□□□□□ -1.91
SSH4YKL124W ERI1P62651 68 aaKnown RBP3.12□□□□□ -1.91
SSH4YKL124W CYT2Q00873 224 aa3.12□□□□□ -1.91
SSH4YKL124W PAU23Q07987 124 aa3.12□□□□□ -1.91
SSH4YKL124W PAU17Q12370 124 aa3.12□□□□□ -1.91
SSH4YKL124W YDR119W-AQ2V2P9 66 aa3.12□□□□□ -1.91
SSH4YKL124W YMR175W-AQ3E766 64 aa3.12□□□□□ -1.91
SSH4YKL124W KRE1P17260 313 aa3.11□□□□□ -1.91
SSH4YKL124W FYV5P25585 152 aa3.11□□□□□ -1.91
SSH4YKL124W YNL198CP40166 100 aa3.11□□□□□ -1.91
SSH4YKL124W LIP1Q03579 150 aa3.11□□□□□ -1.91
SSH4YKL124W MRPS9P38120 278 aa3.1□□□□□ -1.91
SSH4YKL124W EMC6Q12431 108 aa3.1□□□□□ -1.91
SSH4YKL124W YLL066W-BQ8TGJ7 56 aa3.1□□□□□ -1.91
SSH4YKL124W YPR010C-AA5Z2X5 72 aa3.1□□□□□ -1.91
SSH4YKL124W RTC6O14464 93 aa3.1□□□□□ -1.91
SSH4YKL124W QCR10P37299 77 aa3.1□□□□□ -1.91
SSH4YKL124W ATG8P38182 117 aaRIP-Chip data3.1□□□□□ -1.91not detected
SSH4YKL124W HSP10P38910 106 aa3.1□□□□□ -1.91
SSH4YKL124W ARC15P40518 154 aaRIP-Chip data3.1□□□□□ -1.91not detected
SSH4YKL124W MPC3P53311 146 aa3.1□□□□□ -1.91
SSH4YKL124W PBA1Q05778 276 aa3.1□□□□□ -1.91
SSH4YKL124W PAU7P39545 55 aa3.09□□□□□ -1.91
SSH4YKL124W PAU5P43575 122 aa3.09□□□□□ -1.91
SSH4YKL124W HUR1P45820 110 aa3.09□□□□□ -1.91
SSH4YKL124W YPR195CQ06594 109 aa3.09□□□□□ -1.91
SSH4YKL124W YLR363W-AQ3E747 85 aa3.09□□□□□ -1.91
SSH4YKL124W YOR381W-AQ3E804 55 aa3.09□□□□□ -1.91
SSH4YKL124W RPL33AP05744 107 aaKnown RBP3.08□□□□□ -1.92
SSH4YKL124W RPL33BP41056 107 aaKnown RBP3.08□□□□□ -1.92
SSH4YKL124W PMP3P87284 55 aa3.08□□□□□ -1.92
SSH4YKL124W SOM1Q05676 74 aa3.08□□□□□ -1.92
SSH4YKL124W YMR122W-AQ3E842 84 aa3.08□□□□□ -1.92
SSH4YKL124W YCL021W-AQ96VH3 125 aa3.08□□□□□ -1.92
SSH4YKL124W RPL42AP0CX27 106 aaKnown RBP3.07□□□□□ -1.92
SSH4YKL124W RPL42BP0CX28 106 aaKnown RBP3.07□□□□□ -1.92
SSH4YKL124W YER187WP40102 141 aa3.07□□□□□ -1.92
SSH4YKL124W TOM6P33448 61 aa3.07□□□□□ -1.92
SSH4YKL124W YOR268CQ08734 132 aa3.07□□□□□ -1.92
SSH4YKL124W PAU21P0CE86 164 aa3.06□□□□□ -1.92
SSH4YKL124W PAU22P0CE87 164 aa3.06□□□□□ -1.92
SSH4YKL124W POP3P53833 195 aaPredicted RBP3.06□□□□□ -1.92
SSH4YKL124W VMA21P41806 77 aa3.05□□□□□ -1.92
SSH4YKL124W ICY1Q04329 127 aa3.05□□□□□ -1.92
Retrieved 100 of 5,963 RNA–protein pairs in 32 ms