RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeastyeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSM4YIL030C CWP2P43497 92 aa2.56□□□□□ -2
SSM4YIL030C YCL048W-AQ2V2Q2 79 aa2.56□□□□□ -2
SSM4YIL030C RAD6P06104 172 aa2.55□□□□□ -2
SSM4YIL030C ATP15P21306 62 aa2.55□□□□□ -2
SSM4YIL030C YER085CP40058 173 aa2.55□□□□□ -2
SSM4YIL030C YNL190WP53872 204 aa2.55□□□□□ -2
SSM4YIL030C HOR7Q05827 59 aa2.55□□□□□ -2
SSM4YIL030C YLR162WQ06235 118 aa2.55□□□□□ -2
SSM4YIL030C YJL197C-AP0C5P0 93 aa2.55□□□□□ -2
SSM4YIL030C SPG4Q04438 115 aa2.55□□□□□ -2
SSM4YIL030C YNL162W-AQ3E7A8 72 aa2.55□□□□□ -2
SSM4YIL030C YSY6P38374 65 aa2.54□□□□□ -2
SSM4YIL030C YGR240C-AQ3E786 66 aa2.54□□□□□ -2
SSM4YIL030C RTG1P32607 177 aa2.54□□□□□ -2
SSM4YIL030C YMR122W-AQ3E842 84 aa2.54□□□□□ -2
SSM4YIL030C ERG28P40030 148 aa2.53□□□□□ -2
SSM4YIL030C YMR295CQ03559 197 aa2.53□□□□□ -2
SSM4YIL030C YFR009W-AP0C5M9 85 aa2.53□□□□□ -2
SSM4YIL030C YMR181CQ03231 154 aa2.53□□□□□ -2
SSM4YIL030C YGR121W-AQ3E816 71 aa2.53□□□□□ -2
SSM4YIL030C MSN1P22148 382 aa2.53□□□□□ -2
SSM4YIL030C YHL018WP38744 120 aaPredicted RBP2.53□□□□□ -2
SSM4YIL030C Q0297Q9ZZV8 51 aa2.53□□□□□ -2
SSM4YIL030C ALG13P53178 202 aa2.52□□□□□ -2.01
SSM4YIL030C UBC7Q02159 165 aa2.52□□□□□ -2.01
SSM4YIL030C POL2P21951 2222 aaKnown RBP2.52□□□□□ -2.01
SSM4YIL030C RPC10P40422 70 aa2.52□□□□□ -2.01
SSM4YIL030C ATP23P53722 227 aa2.52□□□□□ -2.01
SSM4YIL030C IRC21Q04772 201 aa2.52□□□□□ -2.01
SSM4YIL030C VAM10Q08474 114 aa2.52□□□□□ -2.01
SSM4YIL030C YLL066W-BQ8TGJ7 56 aa2.52□□□□□ -2.01
SSM4YIL030C RPL2AP0CX45 254 aaKnown RBP2.51□□□□□ -2.01
SSM4YIL030C RPL2BP0CX46 254 aaKnown RBP2.51□□□□□ -2.01
SSM4YIL030C INO4P13902 151 aa2.51□□□□□ -2.01
SSM4YIL030C YOL085CQ99345 113 aa2.51□□□□□ -2.01
SSM4YIL030C SBH1P52870 82 aa2.51□□□□□ -2.01
SSM4YIL030C ATP18P81450 59 aa2.51□□□□□ -2.01
SSM4YIL030C YOR304C-AO14468 76 aa2.51□□□□□ -2.01
SSM4YIL030C RPL33AP05744 107 aaKnown RBP2.51□□□□□ -2.01
SSM4YIL030C HOT13P36078 116 aa2.51□□□□□ -2.01
SSM4YIL030C RPL33BP41056 107 aaKnown RBP2.51□□□□□ -2.01
SSM4YIL030C HFA1P32874 2273 aa2.5□□□□□ -2.01
SSM4YIL030C KTI11Q3E840 82 aa2.5□□□□□ -2.01
SSM4YIL030C DSE2P38844 325 aa2.49□□□□□ -2.01
SSM4YIL030C YER135CP40082 130 aa2.49□□□□□ -2.01
SSM4YIL030C YLL006W-AQ3E814 58 aa2.49□□□□□ -2.01
SSM4YIL030C RPL28P02406 149 aaKnown RBP2.49□□□□□ -2.01
SSM4YIL030C MMS2P53152 137 aa2.49□□□□□ -2.01
SSM4YIL030C COX23P38824 151 aa2.49□□□□□ -2.01
SSM4YIL030C HAL1Q01766 294 aa2.49□□□□□ -2.01
SSM4YIL030C YLR415CO13578 112 aa2.48□□□□□ -2.01
SSM4YIL030C YGR035W-AQ45U48 73 aa2.48□□□□□ -2.01
SSM4YIL030C YBR121C-AP0C5L4 52 aa2.48□□□□□ -2.01
SSM4YIL030C HUR1P45820 110 aa2.48□□□□□ -2.01
SSM4YIL030C YDR115WQ04598 105 aa2.48□□□□□ -2.01
SSM4YIL030C YBR126W-AQ8TGU7 68 aa2.48□□□□□ -2.01
SSM4YIL030C SPS100P13130 326 aa2.47□□□□□ -2.01
SSM4YIL030C CRC1Q12289 327 aa2.47□□□□□ -2.01
SSM4YIL030C KSH1Q8TGJ3 72 aa2.47□□□□□ -2.01
SSM4YIL030C SFT1P43682 97 aa2.47□□□□□ -2.01
SSM4YIL030C ERI1P62651 68 aaKnown RBP2.47□□□□□ -2.01
SSM4YIL030C YER187WP40102 141 aa2.46□□□□□ -2.02
SSM4YIL030C YAR1P46683 200 aa2.46□□□□□ -2.02
SSM4YIL030C COX17Q12287 69 aa2.46□□□□□ -2.02
SSM4YIL030C RPL36BO14455 100 aaKnown RBP2.46□□□□□ -2.02
SSM4YIL030C RPL36AP05745 100 aaPredicted RBP2.46□□□□□ -2.02
SSM4YIL030C MLF3P32047 452 aa2.46□□□□□ -2.02
SSM4YIL030C IGD1P43598 195 aa2.46□□□□□ -2.02
SSM4YIL030C YJR107C-AP0CT86 78 aa2.45□□□□□ -2.02
SSM4YIL030C PEX22P39718 180 aa2.45□□□□□ -2.02
SSM4YIL030C YHL005CP38752 130 aa2.44□□□□□ -2.02
SSM4YIL030C RPL18AP0CX49 186 aaKnown RBP2.44□□□□□ -2.02
SSM4YIL030C RPL18BP0CX50 186 aaKnown RBP2.44□□□□□ -2.02
SSM4YIL030C YEL045CP32616 141 aa2.44□□□□□ -2.02
SSM4YIL030C YOR314WQ12506 109 aa2.44□□□□□ -2.02
SSM4YIL030C PBI2P0CT04 75 aaKnown RBP2.43□□□□□ -2.02
SSM4YIL030C YCR050CP25630 102 aa2.43□□□□□ -2.02
SSM4YIL030C KEG1P43614 200 aa2.43□□□□□ -2.02
SSM4YIL030C YLR156WP0CE96 114 aa2.42□□□□□ -2.02
SSM4YIL030C YLR159WP0CE97 114 aa2.42□□□□□ -2.02
SSM4YIL030C YLR161WP0CE98 114 aa2.42□□□□□ -2.02
SSM4YIL030C PMP3P87284 55 aa2.42□□□□□ -2.02
SSM4YIL030C YOL014WQ08110 124 aa2.42□□□□□ -2.02
SSM4YIL030C YPR010C-AA5Z2X5 72 aa2.42□□□□□ -2.02
SSM4YIL030C YDR274CP87283 123 aa2.42□□□□□ -2.02
SSM4YIL030C YBR230W-AQ3E762 66 aa2.42□□□□□ -2.02
SSM4YIL030C YRA2P36036 203 aaKnown RBP RIP-Chip data2.41□□□□□ -2.02not detected
SSM4YIL030C YBL081WP38180 368 aaKnown RBP2.41□□□□□ -2.02
SSM4YIL030C MPC3P53311 146 aa2.41□□□□□ -2.02
SSM4YIL030C EMC6Q12431 108 aa2.41□□□□□ -2.02
SSM4YIL030C YKL065W-AQ2V2P2 73 aa2.41□□□□□ -2.02
SSM4YIL030C EDC1P53080 175 aaPredicted RBP2.41□□□□□ -2.02
SSM4YIL030C SPO24Q3E752 67 aa2.41□□□□□ -2.02
SSM4YIL030C ECM19Q06011 112 aa2.41□□□□□ -2.02
SSM4YIL030C EDC2P40023 145 aaPredicted RBP2.4□□□□□ -2.03
SSM4YIL030C YFL019CP43576 117 aa2.4□□□□□ -2.03
SSM4YIL030C YGR039WP53225 103 aa2.4□□□□□ -2.03
SSM4YIL030C ATP20Q12233 115 aa2.4□□□□□ -2.03
SSM4YIL030C YKL183C-AQ3E765 70 aa2.4□□□□□ -2.03
SSM4YIL030C YER121WP40076 114 aa2.39□□□□□ -2.03
Retrieved 100 of 5,963 RNA–protein pairs in 129.9 ms