RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	UBC5	P15732	148 aa		2.88	□□□□□ -1.95
CAF16	YFL028C	DCV1	P43595	202 aa		2.88	□□□□□ -1.95
CAF16	YFL028C	PFY1	P07274	126 aa		2.87	□□□□□ -1.95
CAF16	YFL028C	YNL200C	P40165	246 aa	Known RBP	2.87	□□□□□ -1.95
CAF16	YFL028C	PMP3	P87284	55 aa		2.87	□□□□□ -1.95
CAF16	YFL028C	YIL014C-A	Q02598	104 aa		2.87	□□□□□ -1.95
CAF16	YFL028C	MGR2	Q02889	113 aa		2.87	□□□□□ -1.95
CAF16	YFL028C	YLR050C	Q12155	161 aa	Known RBP	2.87	□□□□□ -1.95
CAF16	YFL028C	PRE1	P22141	198 aa	Known RBP	2.86	□□□□□ -1.95
CAF16	YFL028C	GSP1	P32835	219 aa	Known RBP	2.86	□□□□□ -1.95
CAF16	YFL028C	GSP2	P32836	220 aa	Known RBP	2.86	□□□□□ -1.95
CAF16	YFL028C	YER134C	P40081	178 aa		2.86	□□□□□ -1.95
CAF16	YFL028C	SPC1	P46965	94 aa		2.86	□□□□□ -1.95
CAF16	YFL028C	ARL3	Q02804	198 aa		2.86	□□□□□ -1.95
CAF16	YFL028C	YHR086W-A	Q3E746	53 aa		2.86	□□□□□ -1.95
CAF16	YFL028C	YLL066W-B	Q8TGJ7	56 aa		2.86	□□□□□ -1.95
CAF16	YFL028C	MRP49	P32388	137 aa		2.85	□□□□□ -1.95
CAF16	YFL028C	YKR070W	P36151	352 aa	Known RBP	2.85	□□□□□ -1.95
CAF16	YFL028C	ERI1	P62651	68 aa	Known RBP	2.85	□□□□□ -1.95
CAF16	YFL028C	YMR122W-A	Q3E842	84 aa		2.85	□□□□□ -1.95
CAF16	YFL028C	YAR023C	D6VPM8	179 aa		2.84	□□□□□ -1.95
CAF16	YFL028C	RPL33A	P05744	107 aa	Known RBP	2.84	□□□□□ -1.95
CAF16	YFL028C	YBR209W	P38311	105 aa		2.84	□□□□□ -1.95
CAF16	YFL028C	TOS6	P48560	102 aa		2.84	□□□□□ -1.95
CAF16	YFL028C	SVP26	P38869	228 aa		2.83	□□□□□ -1.96
CAF16	YFL028C	VTC1	P40046	129 aa	RIP-Chip data	2.83	□□□□□ -1.96	not detected
CAF16	YFL028C	MPC3	P53311	146 aa		2.83	□□□□□ -1.96
CAF16	YFL028C	YOR008C-A	Q3E7B9	74 aa		2.83	□□□□□ -1.96
CAF16	YFL028C	RTC6	O14464	93 aa		2.82	□□□□□ -1.96
CAF16	YFL028C	HMRA2	P0CY13	119 aa		2.82	□□□□□ -1.96
CAF16	YFL028C	SSS1	P35179	80 aa		2.82	□□□□□ -1.96
CAF16	YFL028C	YFL019C	P43576	117 aa		2.82	□□□□□ -1.96
CAF16	YFL028C	POP3	P53833	195 aa	Predicted RBP	2.82	□□□□□ -1.96
CAF16	YFL028C	YDR042C	Q03205	200 aa		2.82	□□□□□ -1.96
CAF16	YFL028C	CUE4	Q04201	117 aa	Predicted RBP	2.82	□□□□□ -1.96
CAF16	YFL028C	YMR320W	Q04897	101 aa		2.82	□□□□□ -1.96
CAF16	YFL028C	COA3	Q3E7B2	85 aa		2.82	□□□□□ -1.96
CAF16	YFL028C	YPR010C-A	A5Z2X5	72 aa		2.81	□□□□□ -1.96
CAF16	YFL028C	YBR219C	P38317	127 aa		2.81	□□□□□ -1.96
CAF16	YFL028C	YEL008W	P40001	126 aa		2.81	□□□□□ -1.96
CAF16	YFL028C	ERV14	P53173	138 aa		2.81	□□□□□ -1.96
CAF16	YFL028C	PKR1	Q03880	122 aa	Known RBP	2.81	□□□□□ -1.96
CAF16	YFL028C	SEN15	Q04675	128 aa		2.81	□□□□□ -1.96
CAF16	YFL028C	RRT15	Q3E811	62 aa		2.81	□□□□□ -1.96
CAF16	YFL028C	FYV4	P38783	130 aa	Predicted RBP	2.8	□□□□□ -1.96
CAF16	YFL028C	DSE2	P38844	325 aa		2.8	□□□□□ -1.96
CAF16	YFL028C	YMR295C	Q03559	197 aa		2.8	□□□□□ -1.96
CAF16	YFL028C	YIL134C-A	Q45U18	67 aa		2.8	□□□□□ -1.96
CAF16	YFL028C	YLR236C	A0A023PZG4	107 aa		2.79	□□□□□ -1.96
CAF16	YFL028C	ANB1	P19211	157 aa		2.79	□□□□□ -1.96
CAF16	YFL028C	MRPL11	P36521	249 aa	Predicted RBP	2.79	□□□□□ -1.96
CAF16	YFL028C	YMR103C	Q04436	120 aa		2.79	□□□□□ -1.96
CAF16	YFL028C	PAU16	P35994	123 aa		2.78	□□□□□ -1.96
CAF16	YFL028C	YAR029W	P39549	74 aa		2.78	□□□□□ -1.96
CAF16	YFL028C	GAT4	P40569	121 aa		2.78	□□□□□ -1.96
CAF16	YFL028C	ENV10	Q99382	181 aa		2.78	□□□□□ -1.96
CAF16	YFL028C	YAL064W	P39711	94 aa		2.77	□□□□□ -1.97
CAF16	YFL028C	RPC10	P40422	70 aa		2.77	□□□□□ -1.97
CAF16	YFL028C	YLR194C	Q05777	254 aa		2.77	□□□□□ -1.97
CAF16	YFL028C	YLR412C-A	Q3E742	68 aa		2.77	□□□□□ -1.97
CAF16	YFL028C	COA6	Q3E846	104 aa		2.77	□□□□□ -1.97
CAF16	YFL028C	RPS28B	P0C0X0	67 aa	Known RBP	2.76	□□□□□ -1.97
CAF16	YFL028C	YDL022C-A	P0C5L6	82 aa		2.76	□□□□□ -1.97
CAF16	YFL028C	AIM11	P87275	137 aa		2.76	□□□□□ -1.97
CAF16	YFL028C	CNL1	Q06333	122 aa		2.76	□□□□□ -1.97
CAF16	YFL028C	LCL2	Q08045	131 aa		2.76	□□□□□ -1.97
CAF16	YFL028C	FYV12	Q08559	129 aa		2.76	□□□□□ -1.97
CAF16	YFL028C	RPS28A	Q3E7X9	67 aa	Predicted RBP	2.76	□□□□□ -1.97
CAF16	YFL028C	SCS22	Q6Q595	175 aa		2.76	□□□□□ -1.97
CAF16	YFL028C	SEC11	P15367	167 aa		2.75	□□□□□ -1.97
CAF16	YFL028C	SBH1	P52870	82 aa		2.75	□□□□□ -1.97
CAF16	YFL028C	YMR175W-A	Q3E766	64 aa		2.75	□□□□□ -1.97
CAF16	YFL028C	YAL065C	O13511	128 aa		2.74	□□□□□ -1.97
CAF16	YFL028C	SHU1	P38751	150 aa		2.74	□□□□□ -1.97
CAF16	YFL028C	CIN5	P40917	295 aa		2.74	□□□□□ -1.97
CAF16	YFL028C	KNH1	P50112	268 aa		2.74	□□□□□ -1.97
CAF16	YFL028C	YGL230C	P53074	147 aa		2.74	□□□□□ -1.97
CAF16	YFL028C	YPL261C	Q08976	102 aa		2.74	□□□□□ -1.97
CAF16	YFL028C	YDR034C-A	P0C289	58 aa		2.73	□□□□□ -1.97
CAF16	YFL028C	MRPL44	P19956	98 aa		2.73	□□□□□ -1.97
CAF16	YFL028C	YEL067C	P39978	195 aa		2.73	□□□□□ -1.97
CAF16	YFL028C	MSL1	P40567	111 aa	Predicted RBP	2.73	□□□□□ -1.97
CAF16	YFL028C	YDR029W	Q12111	104 aa		2.73	□□□□□ -1.97
CAF16	YFL028C	YKL044W	P36092	106 aa		2.72	□□□□□ -1.97
CAF16	YFL028C	MRPS12	P53732	153 aa		2.72	□□□□□ -1.97
CAF16	YFL028C	SNA2	P56508	79 aa		2.72	□□□□□ -1.97
CAF16	YFL028C	YDL241W	Q07738	123 aa		2.72	□□□□□ -1.97
CAF16	YFL028C	FUN14	P18411	198 aa		2.71	□□□□□ -1.98
CAF16	YFL028C	YPL073C	P40323	161 aa		2.71	□□□□□ -1.98
CAF16	YFL028C	NAT5	Q08689	176 aa		2.71	□□□□□ -1.98
CAF16	YFL028C	YDL157C	Q12082	118 aa		2.71	□□□□□ -1.98
CAF16	YFL028C	QCR8	P08525	94 aa		2.7	□□□□□ -1.98
CAF16	YFL028C	FYV7	Q12247	151 aa		2.7	□□□□□ -1.98
CAF16	YFL028C	AQY2	P0CD90	149 aa		2.69	□□□□□ -1.98
CAF16	YFL028C	YNL190W	P53872	204 aa		2.69	□□□□□ -1.98
CAF16	YFL028C	ATP20	Q12233	115 aa		2.69	□□□□□ -1.98
CAF16	YFL028C	UGX2	P32772	223 aa		2.68	□□□□□ -1.98
CAF16	YFL028C	CWP2	P43497	92 aa		2.68	□□□□□ -1.98
CAF16	YFL028C	LSM8	P47093	109 aa	Known RBP	2.68	□□□□□ -1.98
CAF16	YFL028C	YLL006W-A	Q3E814	58 aa		2.68	□□□□□ -1.98

Retrieved 100 of 5,963 RNA–protein pairs in 103.5 ms