RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C MED11Q99278 115 aa0.72□□□□□ -2.29
VPS54YDR027C PFY1P07274 126 aa0.71□□□□□ -2.29
VPS54YDR027C MRP17P28778 131 aa0.71□□□□□ -2.29
VPS54YDR027C EMP24P32803 203 aaKnown RBP0.71□□□□□ -2.29
VPS54YDR027C ATG8P38182 117 aaRIP-Chip data0.71□□□□□ -2.29not detected
VPS54YDR027C YBR013CP38215 129 aa0.71□□□□□ -2.29
VPS54YDR027C YEL067CP39978 195 aa0.71□□□□□ -2.29
VPS54YDR027C YEL008WP40001 126 aa0.71□□□□□ -2.29
VPS54YDR027C MPM1P40364 252 aa0.71□□□□□ -2.29
VPS54YDR027C UPS3Q04006 179 aa0.71□□□□□ -2.29
VPS54YDR027C YPR153WQ06537 140 aa0.71□□□□□ -2.29
VPS54YDR027C ENV10Q99382 181 aa0.71□□□□□ -2.29
VPS54YDR027C ROX3P25046 220 aa0.71□□□□□ -2.3
VPS54YDR027C CYB5P40312 120 aa0.71□□□□□ -2.3
VPS54YDR027C AVO2Q04749 426 aa0.71□□□□□ -2.3
VPS54YDR027C YLR296WQ05898 108 aa0.71□□□□□ -2.3
VPS54YDR027C YLR363W-AQ3E747 85 aa0.71□□□□□ -2.3
VPS54YDR027C YFL041W-AQ3E817 63 aa0.71□□□□□ -2.3
VPS54YDR027C RPL22AP05749 121 aaKnown RBP0.71□□□□□ -2.3
VPS54YDR027C PAU21P0CE86 164 aa0.71□□□□□ -2.3
VPS54YDR027C PAU22P0CE87 164 aa0.71□□□□□ -2.3
VPS54YDR027C QCR10P37299 77 aa0.71□□□□□ -2.3
VPS54YDR027C HPA3P39979 161 aa0.71□□□□□ -2.3
VPS54YDR027C SPI1P40092 148 aa0.71□□□□□ -2.3
VPS54YDR027C PAU15P40585 124 aa0.71□□□□□ -2.3
VPS54YDR027C YMR030W-AQ3E760 96 aa0.71□□□□□ -2.3
VPS54YDR027C YLR365WQ7LIF2 110 aa0.71□□□□□ -2.3
VPS54YDR027C FUN14P18411 198 aa0.7□□□□□ -2.3
VPS54YDR027C YER187WP40102 141 aa0.7□□□□□ -2.3
VPS54YDR027C YJL218WP40892 196 aaKnown RBP0.7□□□□□ -2.3
VPS54YDR027C YDL241WQ07738 123 aa0.7□□□□□ -2.3
VPS54YDR027C YLR042CQ07990 161 aa0.7□□□□□ -2.3
VPS54YDR027C RPS25AQ3E792 108 aaPredicted RBP0.7□□□□□ -2.3
VPS54YDR027C YPL038W-AQ3E7B4 63 aa0.7□□□□□ -2.3
VPS54YDR027C PAU19P0CE85 124 aa0.7□□□□□ -2.3
VPS54YDR027C FYV5P25585 152 aa0.7□□□□□ -2.3
VPS54YDR027C PAU3P25610 124 aa0.7□□□□□ -2.3
VPS54YDR027C RSM18P40033 138 aa0.7□□□□□ -2.3
VPS54YDR027C RPL22BP56628 122 aaKnown RBP0.7□□□□□ -2.3
VPS54YDR027C YDR042CQ03205 200 aa0.7□□□□□ -2.3
VPS54YDR027C VAM10Q08474 114 aa0.7□□□□□ -2.3
VPS54YDR027C POC4Q12245 148 aaPredicted RBP0.7□□□□□ -2.3
VPS54YDR027C YIL102C-AQ2V2P5 75 aa0.7□□□□□ -2.3
VPS54YDR027C TAR1Q8TGM6 124 aa0.7□□□□□ -2.3
VPS54YDR027C OST5Q92316 86 aa0.7□□□□□ -2.3
VPS54YDR027C YAL065CO13511 128 aa0.69□□□□□ -2.3
VPS54YDR027C AQY2P0CD90 149 aa0.69□□□□□ -2.3
VPS54YDR027C YHL042WP38729 150 aa0.69□□□□□ -2.3
VPS54YDR027C ICS3P47034 131 aa0.69□□□□□ -2.3
VPS54YDR027C MIC27P50945 234 aa0.69□□□□□ -2.3
VPS54YDR027C BRP1P53194 125 aa0.69□□□□□ -2.3
VPS54YDR027C YDR102CQ03864 110 aa0.69□□□□□ -2.3
VPS54YDR027C SOM1Q05676 74 aa0.69□□□□□ -2.3
VPS54YDR027C DAD1Q12248 94 aa0.69□□□□□ -2.3
VPS54YDR027C YOR314WQ12506 109 aa0.69□□□□□ -2.3
VPS54YDR027C YDR119W-AQ2V2P9 66 aa0.69□□□□□ -2.3
VPS54YDR027C HMRA1P0CY11 126 aa0.69□□□□□ -2.3
VPS54YDR027C YCR050CP25630 102 aa0.69□□□□□ -2.3
VPS54YDR027C SSS1P35179 80 aa0.69□□□□□ -2.3
VPS54YDR027C YAR029WP39549 74 aa0.69□□□□□ -2.3
VPS54YDR027C SIP18P50263 79 aa0.69□□□□□ -2.3
VPS54YDR027C COA4Q05809 96 aa0.69□□□□□ -2.3
VPS54YDR027C YDR182W-AQ3E796 67 aa0.69□□□□□ -2.3
VPS54YDR027C YHR213WP0CI67 198 aa0.68□□□□□ -2.3
VPS54YDR027C PAU16P35994 123 aa0.68□□□□□ -2.3
VPS54YDR027C ATX1P38636 73 aa0.68□□□□□ -2.3
VPS54YDR027C TDA2P40045 126 aa0.68□□□□□ -2.3
VPS54YDR027C YGR269WP40326 108 aa0.68□□□□□ -2.3
VPS54YDR027C YFL065CP43539 102 aa0.68□□□□□ -2.3
VPS54YDR027C NMA1Q06178 401 aaKnown RBP0.68□□□□□ -2.3
VPS54YDR027C HPA2Q06592 156 aa0.68□□□□□ -2.3
VPS54YDR027C IRC19Q07843 230 aa0.68□□□□□ -2.3
VPS54YDR027C YPR203WQ08994 102 aa0.68□□□□□ -2.3
VPS54YDR027C YGL194C-AQ2V2P6 80 aa0.68□□□□□ -2.3
VPS54YDR027C YDR381C-AQ3E6R5 114 aa0.68□□□□□ -2.3
VPS54YDR027C YNR034W-AQ3E841 98 aa0.68□□□□□ -2.3
VPS54YDR027C RPL36BO14455 100 aaKnown RBP0.68□□□□□ -2.3
VPS54YDR027C RPL36AP05745 100 aaPredicted RBP0.68□□□□□ -2.3
VPS54YDR027C YHR212W-AP0CX91 67 aa0.68□□□□□ -2.3
VPS54YDR027C YPL261CQ08976 102 aa0.68□□□□□ -2.3
VPS54YDR027C MHF2Q3E829 80 aa0.68□□□□□ -2.3
VPS54YDR027C MIC10Q96VH5 97 aa0.68□□□□□ -2.3
VPS54YDR027C YBR027CP38220 110 aa0.67□□□□□ -2.3
VPS54YDR027C POR2P40478 281 aa0.67□□□□□ -2.3
VPS54YDR027C DCV1P43595 202 aa0.67□□□□□ -2.3
VPS54YDR027C YOL131WQ08270 108 aa0.67□□□□□ -2.3
VPS54YDR027C COX19Q3E731 98 aa0.67□□□□□ -2.3
VPS54YDR027C MHF1Q3E835 90 aa0.67□□□□□ -2.3
VPS54YDR027C RTC6O14464 93 aa0.67□□□□□ -2.3
VPS54YDR027C YJL009WP47078 108 aa0.67□□□□□ -2.3
VPS54YDR027C YGL149WP53116 101 aa0.67□□□□□ -2.3
VPS54YDR027C IRC21Q04772 201 aa0.67□□□□□ -2.3
VPS54YDR027C DDR48P18899 430 aaKnown RBP0.66□□□□□ -2.3
VPS54YDR027C HSP150P32478 413 aa0.66□□□□□ -2.3
VPS54YDR027C YKL044WP36092 106 aa0.66□□□□□ -2.3
VPS54YDR027C YEL014CP39999 101 aa0.66□□□□□ -2.3
VPS54YDR027C ICY1Q04329 127 aa0.66□□□□□ -2.3
VPS54YDR027C YOR105WQ08504 108 aa0.66□□□□□ -2.3
VPS54YDR027C CMC4Q3E7A9 73 aa0.66□□□□□ -2.3
VPS54YDR027C LST8P41318 303 aa0.66□□□□□ -2.3
Retrieved 100 of 5,963 RNA–protein pairs in 17.5 ms