RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W RRT15Q3E811 62 aa9.82□□□□□ -0.84
DEP1YAL013W YLR296WQ05898 108 aa9.81□□□□□ -0.84
DEP1YAL013W VTS1Q08831 523 aaKnown RBP RIP-Chip data9.81□□□□□ -0.84not detected
DEP1YAL013W MBF1O14467 151 aaKnown RBP9.8□□□□□ -0.84
DEP1YAL013W YPR170W-BP0C5R9 85 aa9.8□□□□□ -0.84
DEP1YAL013W YAL064WP39711 94 aa9.79□□□□□ -0.84
DEP1YAL013W CWP2P43497 92 aa9.79□□□□□ -0.84
DEP1YAL013W UIP3P39547 235 aa9.77□□□□□ -0.85
DEP1YAL013W YER181CP40097 107 aa9.75□□□□□ -0.85
DEP1YAL013W UBC11P52492 156 aa9.75□□□□□ -0.85
DEP1YAL013W MID2P36027 376 aa9.74□□□□□ -0.85
DEP1YAL013W PAI3P01094 68 aa9.72□□□□□ -0.85
DEP1YAL013W RPL11AP0C0W9 174 aaKnown RBP9.72□□□□□ -0.85
DEP1YAL013W CDC43P18898 376 aa9.72□□□□□ -0.85
DEP1YAL013W YIL102C-AQ2V2P5 75 aa9.72□□□□□ -0.85
DEP1YAL013W RPL11BQ3E757 174 aaPredicted RBP9.72□□□□□ -0.85
DEP1YAL013W YLL006W-AQ3E814 58 aa9.71□□□□□ -0.86
DEP1YAL013W YAR023CD6VPM8 179 aa9.7□□□□□ -0.86
DEP1YAL013W POP7P38291 140 aa9.69□□□□□ -0.86
DEP1YAL013W YPR195CQ06594 109 aa9.69□□□□□ -0.86
DEP1YAL013W CPR1P14832 162 aaKnown RBP9.67□□□□□ -0.86
DEP1YAL013W YNL198CP40166 100 aa9.67□□□□□ -0.86
DEP1YAL013W RGM1Q00453 211 aa9.67□□□□□ -0.86
DEP1YAL013W YIA6P40556 373 aa9.65□□□□□ -0.86
DEP1YAL013W MVB12P42939 101 aa9.65□□□□□ -0.86
DEP1YAL013W LSM6Q06406 86 aaKnown RBP9.65□□□□□ -0.86
DEP1YAL013W YOR020W-AQ3E824 90 aa9.65□□□□□ -0.86
DEP1YAL013W RPL29P05747 59 aaPredicted RBP9.64□□□□□ -0.87
DEP1YAL013W AQY2P0CD90 149 aa9.64□□□□□ -0.87
DEP1YAL013W STF1P01098 86 aa9.63□□□□□ -0.87
DEP1YAL013W HPA2Q06592 156 aa9.63□□□□□ -0.87
DEP1YAL013W ABF2Q02486 183 aa9.62□□□□□ -0.87
DEP1YAL013W ISU2Q12056 156 aa9.62□□□□□ -0.87
DEP1YAL013W YHR130CP38834 111 aa9.61□□□□□ -0.87
DEP1YAL013W SMD1Q02260 146 aaPredicted RBP9.61□□□□□ -0.87
DEP1YAL013W MDN1Q12019 4910 aaKnown RBP9.59□□□□□ -0.87
DEP1YAL013W NHP2P32495 156 aaPredicted RBP9.59□□□□□ -0.87
DEP1YAL013W YFL019CP43576 117 aa9.59□□□□□ -0.87
DEP1YAL013W YPL229WQ99395 206 aa9.59□□□□□ -0.87
DEP1YAL013W YBL039W-BP0C268 59 aa9.58□□□□□ -0.88
DEP1YAL013W EOS1P53938 366 aa9.58□□□□□ -0.88
DEP1YAL013W SNA2P56508 79 aa9.58□□□□□ -0.88
DEP1YAL013W ANB1P19211 157 aa9.56□□□□□ -0.88
DEP1YAL013W TMA7Q3E764 64 aaKnown RBP9.56□□□□□ -0.88
DEP1YAL013W MRP10O75012 95 aa9.55□□□□□ -0.88
DEP1YAL013W COX10P21592 462 aa9.55□□□□□ -0.88
DEP1YAL013W SMP1P38128 452 aa9.55□□□□□ -0.88
DEP1YAL013W YDR029WQ12111 104 aa9.55□□□□□ -0.88
DEP1YAL013W HYP2P23301 157 aaKnown RBP9.54□□□□□ -0.88
DEP1YAL013W ARO2P28777 376 aaKnown RBP9.54□□□□□ -0.88
DEP1YAL013W AIM19P40502 157 aa9.54□□□□□ -0.88
DEP1YAL013W IGD1P43598 195 aa9.54□□□□□ -0.88
DEP1YAL013W KNH1P50112 268 aa9.53□□□□□ -0.88
DEP1YAL013W YDR034C-AP0C289 58 aa9.52□□□□□ -0.89
DEP1YAL013W IRC21Q04772 201 aa9.52□□□□□ -0.89
DEP1YAL013W MET32Q12041 191 aa9.51□□□□□ -0.89
DEP1YAL013W YNL162W-AQ3E7A8 72 aa9.51□□□□□ -0.89
DEP1YAL013W UBC4P15731 148 aa9.5□□□□□ -0.89
DEP1YAL013W ICY1Q04329 127 aa9.5□□□□□ -0.89
DEP1YAL013W MRPL24P36525 258 aaPredicted RBP9.47□□□□□ -0.89
DEP1YAL013W PEX22P39718 180 aa9.47□□□□□ -0.89
DEP1YAL013W YGL041C-BQ3E750 60 aa9.47□□□□□ -0.89
DEP1YAL013W YLR307C-AQ3E825 87 aa9.47□□□□□ -0.89
DEP1YAL013W HUR1P45820 110 aa9.46□□□□□ -0.9
DEP1YAL013W YOR034C-AQ3E735 80 aa9.46□□□□□ -0.9
DEP1YAL013W YLR236CA0A023PZG4 107 aa9.45□□□□□ -0.9
DEP1YAL013W ECM12O13529 151 aa9.45□□□□□ -0.9
DEP1YAL013W LCL2Q08045 131 aa9.43□□□□□ -0.9
DEP1YAL013W Q0032Q9ZZX7 96 aa9.43□□□□□ -0.9
DEP1YAL013W DUT1P33317 147 aa9.42□□□□□ -0.9
DEP1YAL013W GAT4P40569 121 aa9.4□□□□□ -0.9
DEP1YAL013W MSA2P36157 363 aa9.39□□□□□ -0.91
DEP1YAL013W RPL26AP05743 127 aaKnown RBP9.37□□□□□ -0.91
DEP1YAL013W YGL193CP53097 103 aa9.37□□□□□ -0.91
DEP1YAL013W RPL26BP53221 127 aaKnown RBP9.37□□□□□ -0.91
DEP1YAL013W YBR230W-AQ3E762 66 aa9.34□□□□□ -0.91
DEP1YAL013W FYV5P25585 152 aa9.31□□□□□ -0.92
DEP1YAL013W YNL042W-BQ3E7Z2 85 aa9.31□□□□□ -0.92
DEP1YAL013W MPC3P53311 146 aa9.3□□□□□ -0.92
DEP1YAL013W YJL127C-BQ3E828 52 aa9.29□□□□□ -0.92
DEP1YAL013W DSE2P38844 325 aa9.28□□□□□ -0.92
DEP1YAL013W YPL257WQ08974 193 aa9.27□□□□□ -0.93
DEP1YAL013W SPT4P32914 102 aaPredicted RBP9.23□□□□□ -0.93
DEP1YAL013W LCL1Q02786 101 aa9.23□□□□□ -0.93
DEP1YAL013W YJR107C-AP0CT86 78 aa9.22□□□□□ -0.93
DEP1YAL013W YER039C-AP0CD97 72 aa9.21□□□□□ -0.94
DEP1YAL013W YLR156WP0CE96 114 aa9.21□□□□□ -0.94
DEP1YAL013W YLR159WP0CE97 114 aa9.21□□□□□ -0.94
DEP1YAL013W YLR161WP0CE98 114 aa9.21□□□□□ -0.94
DEP1YAL013W RPA12P32529 125 aaKnown RBP9.21□□□□□ -0.94
DEP1YAL013W GIS2P53849 153 aaKnown RBP RIP-Chip data9.2□□□□□ -0.94 RIP-Chip
DEP1YAL013W SFT1P43682 97 aa9.19□□□□□ -0.94
DEP1YAL013W DDR2P89113 61 aa9.18□□□□□ -0.94
DEP1YAL013W OST2P46964 130 aa9.17□□□□□ -0.94
DEP1YAL013W BET1P22804 142 aa9.13□□□□□ -0.95
DEP1YAL013W ATP18P81450 59 aa9.12□□□□□ -0.95
DEP1YAL013W YDR381C-AQ3E6R5 114 aa9.1□□□□□ -0.95
DEP1YAL013W YFR009W-AP0C5M9 85 aa9.09□□□□□ -0.95
DEP1YAL013W ATX1P38636 73 aa9.09□□□□□ -0.95
DEP1YAL013W BSC4P53841 131 aa9.09□□□□□ -0.95
Retrieved 100 of 5,963 RNA–protein pairs in 13.6 ms