RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 ARHGAP20Q9P2F6 1191 aa12.24□□□□□ -0.45
YBX3-213ENST00000542641 ASB3Q9Y575 518 aa12.24□□□□□ -0.45
YBX3-213ENST00000542641 ATG2AQ2TAZ0 1938 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 SLC38A8A6NNN8 435 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 HHLA1C9JL84 531 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 TNFRSF10BO14763 440 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 TBX10O75333 385 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 CYP1A1P04798 512 aaPredicted RBP12.23□□□□□ -0.45
YBX3-213ENST00000542641 CSH1P0DML2 217 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 CSH2P0DML3 217 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 PTPN2P17706 415 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 LTBRP36941 435 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 EIF4A3P38919 411 aaKnown RBP12.23□□□□□ -0.45
YBX3-213ENST00000542641 RGS7P49802 495 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 CDK17Q00537 523 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 DLX2Q07687 328 aaPredicted RBP12.23□□□□□ -0.45
YBX3-213ENST00000542641 IFRD2Q12894 506 aaPredicted RBP12.23□□□□□ -0.45
YBX3-213ENST00000542641 MTMR3Q13615 1198 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 RARS2Q5T160 578 aaKnown RBP12.23□□□□□ -0.45
YBX3-213ENST00000542641 CCDC186Q7Z3E2 898 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 C1orf131Q8NDD1 294 aaKnown RBP12.23□□□□□ -0.45
YBX3-213ENST00000542641 STKLD1Q8NE28 680 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 CMASQ8NFW8 434 aaPredicted RBP12.23□□□□□ -0.45
YBX3-213ENST00000542641 STK32AQ8WU08 396 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 CPA5Q8WXQ8 436 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 KCTD13Q8WZ19 329 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 PSMG2Q969U7 264 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 HSFY1Q96LI6 401 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 PCDHB18PQ96TA0 734 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 CHP1Q99653 195 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 SYT11Q9BT88 431 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 APOL5Q9BWW9 433 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 LRRC4Q9HBW1 653 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 PNPLA8Q9NP80 782 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 ST7Q9NRC1 585 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 EHD2Q9NZN4 543 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 ADAMTS1Q9UHI8 967 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 CYTH4Q9UIA0 394 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 MAGED2Q9UNF1 606 aaPredicted RBP12.23□□□□□ -0.45
YBX3-213ENST00000542641 PLXNA3P51805 1871 aa12.23□□□□□ -0.45
YBX3-213ENST00000542641 FAM170AA1A519 330 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 RTN3O95197 1032 aaPredicted RBP12.22□□□□□ -0.45
YBX3-213ENST00000542641 POU2F2P09086 479 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 UNGP13051 313 aaPredicted RBP12.22□□□□□ -0.45
YBX3-213ENST00000542641 LCP1P13796 627 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 CDH5P33151 784 aaPredicted RBP12.22□□□□□ -0.45
YBX3-213ENST00000542641 ACADSBP45954 432 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 TKTL1P51854 596 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 KIF11P52732 1056 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 SLC5A3P53794 718 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 SNX16P57768 344 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 USP46P62068 366 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 NOMO3P69849 1222 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 PDCLQ13371 301 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 CLEC16AQ2KHT3 1053 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 NAA35Q5VZE5 725 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 SYCE2Q6PIF2 218 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 CYP26C1Q6V0L0 522 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 GPRIN1Q7Z2K8 1008 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 GRASPQ7Z6J2 395 aaPredicted RBP12.22□□□□□ -0.45
YBX3-213ENST00000542641 SCAMP5Q8TAC9 235 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 SLC30A5Q8TAD4 765 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 SMG7Q92540 1137 aaKnown RBP12.22□□□□□ -0.45
YBX3-213ENST00000542641 ZNF707Q96C28 371 aaPredicted RBP12.22□□□□□ -0.45
YBX3-213ENST00000542641 PPP1R13BQ96KQ4 1090 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 CCDC42Q96M95 316 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 CORO1BQ9BR76 489 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 SLC4A5Q9BY07 1137 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 DEF6Q9H4E7 631 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 FBXO44Q9H4M3 255 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 SYNCQ9H7C4 482 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 NHEJ1Q9H9Q4 299 aaPredicted RBP12.22□□□□□ -0.45
YBX3-213ENST00000542641 COMMD8Q9NX08 183 aa12.22□□□□□ -0.45
YBX3-213ENST00000542641 REV3LO60673 3130 aa12.21□□□□□ -0.45
YBX3-213ENST00000542641 SSU72P8A0A1W2PR75 194 aa12.21□□□□□ -0.45
YBX3-213ENST00000542641 TMCO5BA8MYB1 307 aa12.21□□□□□ -0.45
YBX3-213ENST00000542641 PIK3R2O00459 728 aa12.21□□□□□ -0.45
YBX3-213ENST00000542641 DDX3XO00571 662 aaKnown RBP eCLIP12.21□□□□□ -0.45
YBX3-213ENST00000542641 AKR1B10O60218 316 aa12.21□□□□□ -0.45
YBX3-213ENST00000542641 PAPLNO95428 1278 aa12.21□□□□□ -0.45
YBX3-213ENST00000542641 HMGA1P17096 107 aaKnown RBP12.21□□□□□ -0.45
YBX3-213ENST00000542641 YWHAQP27348 245 aa12.21□□□□□ -0.45
YBX3-213ENST00000542641 NSFP46459 744 aaKnown RBP12.21□□□□□ -0.45
YBX3-213ENST00000542641 ITIH3Q06033 890 aa12.21□□□□□ -0.45
YBX3-213ENST00000542641 ADIGQ0VDE8 80 aa12.21□□□□□ -0.45
YBX3-213ENST00000542641 CLUL1Q15846 466 aa12.21□□□□□ -0.45
YBX3-213ENST00000542641 RAB41Q5JT25 222 aa12.21□□□□□ -0.45
YBX3-213ENST00000542641 CYP4A22Q5TCH4 519 aa12.21□□□□□ -0.45
YBX3-213ENST00000542641 ACAD10Q6JQN1 1059 aa12.21□□□□□ -0.45
YBX3-213ENST00000542641 CES5AQ6NT32 575 aa12.21□□□□□ -0.45
YBX3-213ENST00000542641 GPR149Q86SP6 731 aa12.21□□□□□ -0.45
YBX3-213ENST00000542641 TMEM110Q86TL2 294 aa12.21□□□□□ -0.45
YBX3-213ENST00000542641 ERICH1Q86X53 443 aa12.21□□□□□ -0.45
YBX3-213ENST00000542641 TMTC1Q8IUR5 882 aa12.21□□□□□ -0.45
YBX3-213ENST00000542641 SIX6OS1Q8N1H7 587 aa12.21□□□□□ -0.45
YBX3-213ENST00000542641 MSANTD4Q8NCY6 345 aa12.21□□□□□ -0.45
YBX3-213ENST00000542641 OLIG1Q8TAK6 271 aa12.21□□□□□ -0.45
YBX3-213ENST00000542641 IPO4Q8TEX9 1081 aaKnown RBP12.21□□□□□ -0.45
YBX3-213ENST00000542641 HLA-CQ95604 372 aa12.21□□□□□ -0.45
YBX3-213ENST00000542641 TRMT2BQ96GJ1 504 aaKnown RBP12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 106.8 ms