RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	COL26A1	Q96A83	441 aa		13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	OTUB2	Q96DC9	234 aa		13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	FIZ1	Q96SL8	496 aa		13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	TTLL2	Q9BWV7	592 aa		13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	FAM124B	Q9H5Z6	455 aa	Predicted RBP	13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	ARHGEF4	Q9NR80	690 aa		13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	TBC1D14	Q9P2M4	693 aa		13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	DKK4	Q9UBT3	224 aa		13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	SUSD2	Q9UGT4	822 aa		13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	GTF3C4	Q9UKN8	822 aa		13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	APOBEC2	Q9Y235	224 aa	Known RBP	13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	ATG2B	Q96BY7	2078 aa		13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	ANKRD63	C9JTQ0	380 aa		13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	GABRD	O14764	452 aa		13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	ADAM23	O75077	832 aa		13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	GJB3	O75712	270 aa		13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	CD2BP2	O95400	341 aa	Known RBP	13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	ITGB3	P05106	788 aa		13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	FTH1P19	P0C7X4	201 aa		13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	ACAT1	P24752	427 aa	Known RBP	13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	ANXA13	P27216	316 aa		13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	FAM193A	P78312	1265 aa		13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	NOP14	P78316	857 aa	Known RBP	13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	ZXDB	P98169	803 aa		13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	ZNF33A	Q06730	810 aa		13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	CRELD2	Q6UXH1	353 aa	Predicted RBP	13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	CCNI2	Q6ZMN8	369 aa	Predicted RBP	13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	DENND5B	Q6ZUT9	1274 aa		13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	DPH6	Q7L8W6	267 aa		13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	GLRX5	Q86SX6	157 aa		13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	NAXD	Q8IW45	347 aa		13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	FRMD1	Q8N878	549 aa		13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	C1orf127	Q8N9H9	656 aa		13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	CACTIN	Q8WUQ7	758 aa	Known RBP	13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	POMGNT1	Q8WZA1	660 aa		13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	CALML4	Q96GE6	196 aa		13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	DUSP9	Q99956	384 aa	Known RBP	13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	ZDHHC5	Q9C0B5	715 aa		13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	CHMP5	Q9NZZ3	219 aa		13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	PCDHB9	Q9Y5E1	797 aa		13.29	□□□□□ -0.28
CAPN1-223	ENST00000533079	IGSF10	Q6WRI0	2623 aa		13.28	□□□□□ -0.28
CAPN1-223	ENST00000533079	ABCA7	Q8IZY2	2146 aa		13.28	□□□□□ -0.28
CAPN1-223	ENST00000533079	VWA3A	A6NCI4	1184 aa		13.28	□□□□□ -0.28
CAPN1-223	ENST00000533079	TRIM66	O15016	1216 aa		13.28	□□□□□ -0.28
CAPN1-223	ENST00000533079	ZBTB24	O43167	697 aa	Predicted RBP	13.28	□□□□□ -0.28
CAPN1-223	ENST00000533079	KRT18	P05783	430 aa	Known RBP	13.28	□□□□□ -0.28
CAPN1-223	ENST00000533079	FAM171B	Q6P995	826 aa		13.28	□□□□□ -0.28
CAPN1-223	ENST00000533079	BRSK2	Q8IWQ3	736 aa		13.28	□□□□□ -0.28
CAPN1-223	ENST00000533079	ZNF513	Q8N8E2	541 aa	Predicted RBP	13.28	□□□□□ -0.28
CAPN1-223	ENST00000533079	LRRC15	Q8TF66	581 aa		13.28	□□□□□ -0.28
CAPN1-223	ENST00000533079	PLIN2	Q99541	437 aa		13.28	□□□□□ -0.28
CAPN1-223	ENST00000533079	CALCOCO1	Q9P1Z2	691 aa		13.28	□□□□□ -0.28
CAPN1-223	ENST00000533079	MAGEC2	Q9UBF1	373 aa	Predicted RBP	13.28	□□□□□ -0.28
CAPN1-223	ENST00000533079	CDH9	Q9ULB4	789 aa		13.28	□□□□□ -0.28
CAPN1-223	ENST00000533079	AGAP1	Q9UPQ3	857 aa		13.28	□□□□□ -0.28
CAPN1-223	ENST00000533079	KIF3A	Q9Y496	699 aa		13.28	□□□□□ -0.28
CAPN1-223	ENST00000533079	CPQ	Q9Y646	472 aa		13.28	□□□□□ -0.28
CAPN1-223	ENST00000533079	ASCC3	Q8N3C0	2202 aa	Known RBP	13.28	□□□□□ -0.28
CAPN1-223	ENST00000533079	CELSR3	Q9NYQ7	3312 aa		13.28	□□□□□ -0.28
CAPN1-223	ENST00000533079	IGHV1OR15-9	A0A0B4J2B8	117 aa		13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	ZNF840P	A6NDX5	716 aa		13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	EIF4E1B	A6NMX2	242 aa	Known RBP	13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	HOXC11	O43248	304 aa	Predicted RBP	13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	LDHA	P00338	332 aa	Known RBP	13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	OAS1	P00973	400 aa	Known RBP	13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	GNS	P15586	552 aa		13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	GABRG2	P18507	467 aa		13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	TFAM	Q00059	246 aa	Known RBP	13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	GAD2	Q05329	585 aa		13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	KDSR	Q06136	332 aa		13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	CUL4A	Q13619	759 aa		13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	SYCP2L	Q5T4T6	812 aa		13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	BTBD8	Q5XKL5	378 aa		13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	RHBDF2	Q6PJF5	856 aa		13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	C19orf48	Q6RUI8	117 aa		13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	C12orf40	Q86WS4	652 aa		13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	PHTF2	Q8N3S3	785 aa		13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	FOXJ1	Q92949	421 aa		13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	MYLPF	Q96A32	169 aa		13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	INTS4	Q96HW7	963 aa	Known RBP	13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	SYT15	Q9BQS2	421 aa		13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	ANP32E	Q9BTT0	268 aa		13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	FSCN3	Q9NQT6	498 aa		13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	KIAA1522	Q9P206	1035 aa	Predicted RBP	13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	EXOC7	Q9UPT5	735 aa		13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	SNX9	Q9Y5X1	595 aa		13.27	□□□□□ -0.29
CAPN1-223	ENST00000533079	E2F8	A0AVK6	867 aa		13.26	□□□□□ -0.29
CAPN1-223	ENST00000533079	ANTXRL	A6NF34	631 aa		13.26	□□□□□ -0.29
CAPN1-223	ENST00000533079	TISP43	B9A030	160 aa		13.26	□□□□□ -0.29
CAPN1-223	ENST00000533079	SH3BP5	O60239	455 aa		13.26	□□□□□ -0.29
CAPN1-223	ENST00000533079	HOXB2	P14652	356 aa		13.26	□□□□□ -0.29
CAPN1-223	ENST00000533079	GRIK1	P39086	918 aa		13.26	□□□□□ -0.29
CAPN1-223	ENST00000533079	UBA7	P41226	1012 aa		13.26	□□□□□ -0.29
CAPN1-223	ENST00000533079	SLC6A11	P48066	632 aa		13.26	□□□□□ -0.29
CAPN1-223	ENST00000533079	MESP2	Q0VG99	397 aa		13.26	□□□□□ -0.29
CAPN1-223	ENST00000533079	MYO1E	Q12965	1108 aa		13.26	□□□□□ -0.29
CAPN1-223	ENST00000533079	PLEKHG6	Q3KR16	790 aa		13.26	□□□□□ -0.29
CAPN1-223	ENST00000533079	TOGARAM2	Q6ZUX3	1019 aa		13.26	□□□□□ -0.29
CAPN1-223	ENST00000533079	OSTM1	Q86WC4	334 aa		13.26	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms