RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 PCDHGC3Q9UN70 934 aa11.3□□□□□ -0.6
UBR4-208ENST00000459947 DUSP12Q9UNI6 340 aa11.3□□□□□ -0.6
UBR4-208ENST00000459947 SRFP11831 508 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 SLC5A3P53794 718 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 AMPD2Q01433 879 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 PPP1R26Q5T8A7 1209 aaPredicted RBP11.29□□□□□ -0.6
UBR4-208ENST00000459947 PAQR9Q6ZVX9 377 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 SIX6OS1Q8N1H7 587 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 ASB16Q96NS5 453 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 ARID3AQ99856 593 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 SIX2Q9NPC8 291 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 CNGB3Q9NQW8 809 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 A0A1W2PRU2 124 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 GLULP15104 373 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 UCHL3P15374 230 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 MAP3K7CLP57077 242 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 HECTD3Q5T447 861 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 KLHDC10Q6PID8 442 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 MCRS1Q96EZ8 462 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 LHX5Q9H2C1 402 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 RTN4Q9NQC3 1192 aaKnown RBP11.29□□□□□ -0.6
UBR4-208ENST00000459947 PI4K2BG5E9Z4 385 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 HCRTO43612 131 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 LSM8O95777 96 aaKnown RBP11.29□□□□□ -0.6
UBR4-208ENST00000459947 MTA1Q13330 715 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 PDGFRLQ15198 375 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 SYCP1Q15431 976 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 ARHGAP44Q17R89 818 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 ZNF394Q53GI3 561 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 FIGNQ5HY92 759 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 CACNA2D4Q7Z3S7 1137 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 FAM71AQ8IYT1 594 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 IPO4Q8TEX9 1081 aaKnown RBP11.29□□□□□ -0.6
UBR4-208ENST00000459947 COL25A1Q9BXS0 654 aaPredicted RBP11.29□□□□□ -0.6
UBR4-208ENST00000459947 PDCL3Q9H2J4 239 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.29□□□□□ -0.6
UBR4-208ENST00000459947 ARHGAP26Q9UNA1 814 aa11.29□□□□□ -0.6
UBR4-208ENST00000459947 A0A1B0GTH6 734 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 M0QYV0 167 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 CLDN5O00501 218 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 TNFRSF10BO14763 440 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 THAP12O43422 761 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 MOSPD3O75425 235 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 FERP16591 822 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 USP8P40818 1118 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 KIF11P52732 1056 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 SLC7A9P82251 487 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 ZXDAP98168 799 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 SIGLEC14Q08ET2 396 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 TRIM14Q14142 442 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 GAREM2Q75VX8 874 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 CMTM8Q8IZV2 173 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 ZSCAN18Q8TBC5 510 aaPredicted RBP11.28□□□□□ -0.6
UBR4-208ENST00000459947 IRF7Q92985 503 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 LIMD1Q9UGP4 676 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 SIK3Q9Y2K2 1263 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 SOAT2O75908 522 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 ZDHHC11BP0C7U3 371 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 KPNA1P52294 538 aaPredicted RBP11.28□□□□□ -0.6
UBR4-208ENST00000459947 RAPGEF1Q13905 1077 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 DRAP1Q14919 205 aaPredicted RBP11.28□□□□□ -0.6
UBR4-208ENST00000459947 SLC5A9Q2M3M2 681 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 BEND5Q7L4P6 421 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 MFSD6LQ8IWD5 586 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 EDAQ92838 391 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 OTUB2Q96DC9 234 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 GANQ9H2C0 597 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 WNT16Q9UBV4 365 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 TPM1P09493 284 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 KRT9P35527 623 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 MAGEA9P43362 315 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 NUBP1P53384 320 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 PRKCQQ04759 706 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 KCNMA1Q12791 1236 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 TAF10Q12962 218 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 RAB41Q5JT25 222 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 CC2D1AQ6P1N0 951 aaPredicted RBP11.28□□□□□ -0.6
UBR4-208ENST00000459947 ZDHHC17Q8IUH5 632 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 ING5Q8WYH8 240 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 TRMT61BQ9BVS5 477 aaKnown RBP11.28□□□□□ -0.6
UBR4-208ENST00000459947 NAA15Q9BXJ9 866 aaKnown RBP11.28□□□□□ -0.6
UBR4-208ENST00000459947 IRX2Q9BZI1 471 aaPredicted RBP11.28□□□□□ -0.6
UBR4-208ENST00000459947 KCNK12Q9HB15 430 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 STRIP2Q9ULQ0 834 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 ZNF510Q9Y2H8 683 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 USP3Q9Y6I4 520 aa11.28□□□□□ -0.6
UBR4-208ENST00000459947 CHADO15335 359 aa11.27□□□□□ -0.6
UBR4-208ENST00000459947 PSMC3P17980 439 aa11.27□□□□□ -0.6
UBR4-208ENST00000459947 GPR15P49685 360 aa11.27□□□□□ -0.6
UBR4-208ENST00000459947 TMEM35BQ8NCS4 154 aa11.27□□□□□ -0.6
UBR4-208ENST00000459947 ZNF397Q8NF99 534 aaPredicted RBP11.27□□□□□ -0.6
UBR4-208ENST00000459947 BPIFB1Q8TDL5 484 aa11.27□□□□□ -0.6
UBR4-208ENST00000459947 DCLK3Q9C098 648 aa11.27□□□□□ -0.6
UBR4-208ENST00000459947 C8orf33Q9H7E9 229 aaPredicted RBP11.27□□□□□ -0.6
UBR4-208ENST00000459947 ASNSD1Q9NWL6 643 aa11.27□□□□□ -0.6
UBR4-208ENST00000459947 TBC1D14Q9P2M4 693 aa11.27□□□□□ -0.6
UBR4-208ENST00000459947 MRPS17Q9Y2R5 130 aaKnown RBP11.27□□□□□ -0.6
UBR4-208ENST00000459947 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.27□□□□□ -0.6
UBR4-208ENST00000459947 BRWD1Q9NSI6 2320 aa11.27□□□□□ -0.61
UBR4-208ENST00000459947 ZNF840PA6NDX5 716 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms