RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 EDIL3O43854 480 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 ATP9AO75110 1047 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 TDP2O95551 362 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 GH1P01241 217 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 TUBB4AP04350 444 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 MMP3P08254 477 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 FAM86B2P0C5J1 330 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 PNMA6AP0CW24 399 aaPredicted RBP4.88□□□□□ -1.63
SF3B1-202ENST00000409915 ARP10275 920 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 CKMT1AP12532 417 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 HOXD8P13378 290 aaPredicted RBP4.88□□□□□ -1.63
SF3B1-202ENST00000409915 FOSL1P15407 271 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 PECAM1P16284 738 aaPredicted RBP4.88□□□□□ -1.63
SF3B1-202ENST00000409915 MX2P20592 715 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 HTR1BP28222 390 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 CST5P28325 142 aaPredicted RBP4.88□□□□□ -1.63
SF3B1-202ENST00000409915 GNA11P29992 359 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 SREBF1P36956 1147 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 ECI1P42126 302 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 TUBP50607 506 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 MECP2P51608 486 aaKnown RBP4.88□□□□□ -1.63
SF3B1-202ENST00000409915 DRG2P55039 364 aaKnown RBP4.88□□□□□ -1.63
SF3B1-202ENST00000409915 RTP1P59025 263 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 ALDH6A1Q02252 535 aaKnown RBP4.88□□□□□ -1.63
SF3B1-202ENST00000409915 SUZ12Q15022 739 aaKnown RBP4.88□□□□□ -1.63
SF3B1-202ENST00000409915 POLD3Q15054 466 aaPredicted RBP4.88□□□□□ -1.63
SF3B1-202ENST00000409915 INF2Q27J81 1249 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 UAP1L1Q3KQV9 507 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 HSDL1Q3SXM5 330 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 PREPLQ4J6C6 727 aaPredicted RBP4.88□□□□□ -1.63
SF3B1-202ENST00000409915 ANO6Q4KMQ2 910 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 EARS2Q5JPH6 523 aaKnown RBP4.88□□□□□ -1.63
SF3B1-202ENST00000409915 KRT40Q6A162 431 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 KLHL10Q6JEL2 608 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 TXNDC11Q6PKC3 985 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 CYFIP1Q7L576 1253 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 TADA2BQ86TJ2 420 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 LRRTM4Q86VH4 590 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 GALNT13Q8IUC8 556 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 LIX1LQ8IVB5 337 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 BLIDQ8IZY5 108 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 EFHBQ8N7U6 833 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 ATG16L2Q8NAA4 619 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 MSANTD4Q8NCY6 345 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 FAM13CQ8NE31 585 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 CCDC112Q8NEF3 446 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 NEK11Q8NG66 645 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 TBCKQ8TEA7 893 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 ZFPM2Q8WW38 1151 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 CRYGNQ8WXF5 182 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 ACSF2Q96CM8 615 aaPredicted RBP4.88□□□□□ -1.63
SF3B1-202ENST00000409915 ABHD17AQ96GS6 310 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 C1orf159Q96HA4 380 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 TMX3Q96JJ7 454 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 SPATA33Q96N06 139 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 PLEKHG4BQ96PX9 1271 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 MXRA8Q9BRK3 442 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 LRFN3Q9BTN0 628 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 HTATIP2Q9BUP3 242 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 PHF20Q9BVI0 1012 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 KATNAL1Q9BW62 490 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 TRIM6Q9C030 488 aaPredicted RBP4.88□□□□□ -1.63
SF3B1-202ENST00000409915 IQCGQ9H095 443 aaKnown RBP4.88□□□□□ -1.63
SF3B1-202ENST00000409915 ABCG4Q9H172 646 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 CCDC68Q9H2F9 335 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 TSPY26PQ9H489 355 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 TRPV5Q9NQA5 729 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 PRDM5Q9NQX1 630 aaPredicted RBP4.88□□□□□ -1.63
SF3B1-202ENST00000409915 SH2B1Q9NRF2 756 aaPredicted RBP4.88□□□□□ -1.63
SF3B1-202ENST00000409915 SPATS2LQ9NUQ6 558 aaKnown RBP4.88□□□□□ -1.63
SF3B1-202ENST00000409915 ARGLU1Q9NWB6 273 aaPredicted RBP4.88□□□□□ -1.63
SF3B1-202ENST00000409915 DNAJC28Q9NX36 388 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 CACNA2D2Q9NY47 1150 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 WHRNQ9P202 907 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 LRFN1Q9P244 771 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 SEL1LQ9UBV2 794 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 ADAM30Q9UKF2 790 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 NOC2LQ9Y3T9 749 aaKnown RBP4.88□□□□□ -1.63
SF3B1-202ENST00000409915 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.88□□□□□ -1.63
SF3B1-202ENST00000409915 UBIAD1Q9Y5Z9 338 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 GRIN2DO15399 1336 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 ATXN2Q99700 1313 aaKnown RBP4.88□□□□□ -1.63
SF3B1-202ENST00000409915 DOCK5Q9H7D0 1870 aa4.88□□□□□ -1.63
SF3B1-202ENST00000409915 KIAA1217Q5T5P2 1943 aa4.87□□□□□ -1.63
SF3B1-202ENST00000409915 RANBP2P49792 3224 aaKnown RBP4.87□□□□□ -1.63
SF3B1-202ENST00000409915 CEP290O15078 2479 aa4.87□□□□□ -1.63
SF3B1-202ENST00000409915 IGLV3-22A0A075B6J6 115 aa4.87□□□□□ -1.63
SF3B1-202ENST00000409915 A0A1W2PPH5 198 aa4.87□□□□□ -1.63
SF3B1-202ENST00000409915 PRAMEF27A3QJZ7 478 aa4.87□□□□□ -1.63
SF3B1-202ENST00000409915 POM121BA6NF01 834 aa4.87□□□□□ -1.63
SF3B1-202ENST00000409915 BTBD18B2RXH4 712 aa4.87□□□□□ -1.63
SF3B1-202ENST00000409915 KIF28PB7ZC32 967 aa4.87□□□□□ -1.63
SF3B1-202ENST00000409915 H0YGN5 161 aa4.87□□□□□ -1.63
SF3B1-202ENST00000409915 ARVCFO00192 962 aa4.87□□□□□ -1.63
SF3B1-202ENST00000409915 DDX3XO00571 662 aaKnown RBP eCLIP4.87□□□□□ -1.633e-10■■■■■ 34.8
SF3B1-202ENST00000409915 C2CD2LO14523 706 aa4.87□□□□□ -1.63
SF3B1-202ENST00000409915 NKRFO15226 690 aaKnown RBP eCLIP4.87□□□□□ -1.63
SF3B1-202ENST00000409915 ZSCAN9O15535 394 aaPredicted RBP4.87□□□□□ -1.63
SF3B1-202ENST00000409915 BNIP3LO60238 219 aa4.87□□□□□ -1.63
SF3B1-202ENST00000409915 CLEC3AO75596 197 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms