RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 TRIM49P0CI25 452 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 TRIM49CP0CI26 452 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 AP1S1P61966 158 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 CDH18Q13634 790 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 MTSS1LQ765P7 747 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 LDHDQ86WU2 507 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 AAASQ9NRG9 546 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 XPO7Q9UIA9 1087 aaKnown RBP12.48□□□□□ -0.41
PCF11-201ENST00000298281 ERVK-7P63135 1459 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 KDM6AO15550 1401 aaPredicted RBP12.48□□□□□ -0.41
PCF11-201ENST00000298281 PHF2O75151 1096 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 USP1O94782 785 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 TRIQKQ629K1 86 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 PMF1Q6P1K2 205 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 CYB5R4Q7L1T6 521 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 CYP4Z2PQ8N1L4 340 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 UCMAQ8WVF2 138 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 GMCL1Q96IK5 515 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 CDY2AQ9Y6F7 541 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 CDY1Q9Y6F8 540 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 NINQ8N4C6 2090 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 CD2BP2O95400 341 aaKnown RBP12.48□□□□□ -0.41
PCF11-201ENST00000298281 LRIG3Q6UXM1 1119 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 PROSER1Q86XN7 944 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 RELL1Q8IUW5 271 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 OTUD5Q96G74 571 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 TASP1Q9H6P5 420 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 CRLS1Q9UJA2 301 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 METP08581 1390 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 OR7A10O76100 309 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 PDGFRAP16234 1089 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 RPS6KA3P51812 740 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 CENPSQ8N2Z9 138 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 C1orf54Q8WWF1 131 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 SERPINH1P50454 418 aaKnown RBP12.48□□□□□ -0.41
PCF11-201ENST00000298281 ZNF677Q86XU0 584 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 DCP1BQ8IZD4 617 aaKnown RBP12.48□□□□□ -0.41
PCF11-201ENST00000298281 CCDC54Q8NEL0 328 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 KCNS3Q9BQ31 491 aa12.48□□□□□ -0.41
PCF11-201ENST00000298281 TCEA3O75764 348 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 POLBP06746 335 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 S100A1P23297 94 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 ZNF200P98182 395 aaPredicted RBP12.47□□□□□ -0.41
PCF11-201ENST00000298281 CDC73Q6P1J9 531 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 XRRA1Q6P2D8 792 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 CNPPD1Q9BV87 410 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 H7C0S8 307 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 REXO5Q96IC2 774 aaKnown RBP12.47□□□□□ -0.41
PCF11-201ENST00000298281 RSAD1Q9HA92 442 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 RAB6BQ9NRW1 208 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 SNX12Q9UMY4 172 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 PCDHB9Q9Y5E1 797 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 PRKAA1Q13131 559 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 BIKQ13323 160 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 GALNTL6Q49A17 601 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 PGBD2Q6P3X8 592 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 CENPLQ8N0S6 344 aaPredicted RBP12.47□□□□□ -0.41
PCF11-201ENST00000298281 RBBP8Q99708 897 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 MIEF1Q9NQG6 463 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 AGAP1Q9UPQ3 857 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 DISP1Q96F81 1524 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.47□□□□□ -0.41
PCF11-201ENST00000298281 ENO4A6NNW6 628 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 PDE9AO76083 593 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 NCOA4Q13772 614 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 CCDC144BQ3MJ40 725 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 SERAC1Q96JX3 654 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 PRAMEF22A3QJZ6 481 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 AIM2O14862 343 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 GJA1P17302 382 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 KCNK10P57789 538 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 FAM9CQ8IZT9 166 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 PACSIN1Q9BY11 444 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 XPO1O14980 1071 aaKnown RBP12.47□□□□□ -0.41
PCF11-201ENST00000298281 TRIM24O15164 1050 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 OR6B1O95007 311 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 CCDC166P0CW27 439 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 PTPN7P35236 360 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 USP10Q14694 798 aaKnown RBP12.47□□□□□ -0.41
PCF11-201ENST00000298281 PDIA6Q15084 440 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 ZNF57Q68EA5 555 aaPredicted RBP12.47□□□□□ -0.41
PCF11-201ENST00000298281 LAYNQ6UX15 382 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 TMC5Q6UXY8 1006 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 LINC00523Q86TU6 105 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 TRPC4APQ8TEL6 797 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 VTA1Q9NP79 307 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 BATF3Q9NR55 127 aa12.47□□□□□ -0.41
PCF11-201ENST00000298281 MGAT4DA6NG13 374 aa12.46□□□□□ -0.41
PCF11-201ENST00000298281 CTSHP09668 335 aa12.46□□□□□ -0.41
PCF11-201ENST00000298281 KRR1Q13601 381 aaKnown RBP12.46□□□□□ -0.41
PCF11-201ENST00000298281 HLFQ16534 295 aa12.46□□□□□ -0.41
PCF11-201ENST00000298281 TTLL9Q3SXZ7 439 aa12.46□□□□□ -0.41
PCF11-201ENST00000298281 GLB1LQ6UWU2 654 aa12.46□□□□□ -0.41
PCF11-201ENST00000298281 B3GALNT2Q8NCR0 500 aa12.46□□□□□ -0.41
PCF11-201ENST00000298281 SEPT1Q8WYJ6 367 aa12.46□□□□□ -0.41
PCF11-201ENST00000298281 DTNBP1Q96EV8 351 aa12.46□□□□□ -0.41
PCF11-201ENST00000298281 NT5C1AQ9BXI3 368 aa12.46□□□□□ -0.41
PCF11-201ENST00000298281 ROPN1BQ9BZX4 212 aaPredicted RBP12.46□□□□□ -0.41
PCF11-201ENST00000298281 ROPN1Q9HAT0 212 aaPredicted RBP12.46□□□□□ -0.41
PCF11-201ENST00000298281 TRIM39Q9HCM9 518 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms