RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 STX16-NPEPL1H3BU86 382 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 STX16O14662 325 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 SUZ12Q15022 739 aaKnown RBP14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 SPATA33Q96N06 139 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 BTBD7Q9P203 1132 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 TNFRSF21O75509 655 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 BAIAP3O94812 1187 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 GALNT3Q14435 633 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 TMEM132BQ14DG7 1078 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 VPS51Q9UID3 782 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 KCTD17Q8N5Z5 321 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 EEF1AKMT1Q8WVE0 214 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 STARD8Q92502 1023 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 SLC9A6Q92581 669 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 SNX8Q9Y5X2 465 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 CBFA2T3O75081 653 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 CALB2P22676 271 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 CNTFP26441 200 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 SERPINB5P36952 375 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 FOXP4Q8IVH2 680 aaPredicted RBP14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 SLC22A9Q8IVM8 553 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 PHACTR4Q8IZ21 702 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 TSPAN14Q8NG11 270 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 NMRK2Q9NPI5 230 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 GCC2Q8IWJ2 1684 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 PVALEFA0A1B0GWK0 134 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 ITGB3BPQ13352 177 aaPredicted RBP14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 FAM98CQ17RN3 349 aaKnown RBP14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 DDI2Q5TDH0 399 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 MMP19Q99542 508 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 FRMD8P1Q9BZ68 369 aaPredicted RBP14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 GGT7Q9UJ14 662 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 SNX9Q9Y5X1 595 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 NR3C2P08235 984 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 CACNB2Q08289 660 aaPredicted RBP14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 CCDC153Q494R4 210 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 BARGINQ6ZT62 677 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 ZBTB5O15062 677 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 RBP5P82980 135 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 EXOSC10Q01780 885 aaKnown RBP14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 TRIM10Q9UDY6 481 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 CHORDC1Q9UHD1 332 aaPredicted RBP14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 ERBB4Q15303 1308 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 SLC16A4O15374 487 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 FAM58BPP0C7Q3 252 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 MYO1HQ8N1T3 1032 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 NACC2Q96BF6 587 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 DNAJC1Q96KC8 554 aaKnown RBP14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 SAE1Q9UBE0 346 aaPredicted RBP14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 ZNF879B4DU55 563 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 PCNAP12004 261 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 HK2P52789 917 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 HLA-DQA1Q5Y7H0 255 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 MAP4K1Q92918 833 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 ROGDIQ9GZN7 287 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 AAR2Q9Y312 384 aaKnown RBP14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 ABCB11O95342 1321 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 RAD51BO15315 384 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 PCSK1P29120 753 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 NUAK2Q9H093 628 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 A0A1W2PQC6 194 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 TMEM120BA0PK00 339 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 KATNA1O75449 491 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 ARF3P61204 181 aaPredicted RBP14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 ARF1P84077 181 aaKnown RBP14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 NFYCQ13952 458 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 TMEM132DQ14C87 1099 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 PLCL1Q15111 1095 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 PREPLQ4J6C6 727 aaPredicted RBP14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 IPMKQ8NFU5 416 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 SLITRK1Q96PX8 696 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 UGT2B28Q9BY64 529 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 CRNNQ9UBG3 495 aaPredicted RBP14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 FCER1AP12319 257 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 LIFRP42702 1097 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 AKR1D1P51857 326 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 CCDC24Q8N4L8 307 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 FBXO28Q9NVF7 368 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 EMSYQ7Z589 1322 aa14.38□□□□□ -0.11
CCDC88A-201ENST00000263630 ESYT3A0FGR9 886 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 GSAPA4D1B5 854 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 PTGER2P43116 358 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 BIKQ13323 160 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 ZFP1Q6P2D0 407 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 ZBTB49Q6ZSB9 765 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 IFNLR1Q8IU57 520 aaPredicted RBP14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 ZNF483Q8TF39 744 aaPredicted RBP14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 USP7Q93009 1102 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 PRKAG3Q9UGI9 489 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 KMOO15229 486 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 PHGDHO43175 533 aaKnown RBP14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 ADD2P35612 726 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 PGBD2Q6P3X8 592 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 RBM7Q9Y580 266 aaKnown RBP14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 FAM92AA1XBS5 289 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 H3BN98 237 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 IL18RAPO95256 599 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 PTSQ03393 145 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 VAC14Q08AM6 782 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 ERMARDQ5T6L9 678 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms