RNA–Protein interactions for RNA: YOR075W

UFE1, Transcript of t-SNARE protein required for retrograde vesicular traffic, yeast

Gene UFE1, Length 1,041 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UFE1	YOR075W	HSP10	P38910	106 aa		0.37	□□□□□ -2.35
UFE1	YOR075W	ELC1	Q03071	99 aa		0.37	□□□□□ -2.35
UFE1	YOR075W	CSN9	Q03981	162 aa		0.37	□□□□□ -2.35
UFE1	YOR075W	YDR524C-B	Q3E6R4	66 aa		0.37	□□□□□ -2.35
UFE1	YOR075W	SNF2	P22082	1703 aa		0.37	□□□□□ -2.35
UFE1	YOR075W	APC1	P53886	1748 aa		0.37	□□□□□ -2.35
UFE1	YOR075W	URB1	P34241	1764 aa	Known RBP	0.37	□□□□□ -2.35
UFE1	YOR075W	TOR2	P32600	2474 aa	Known RBP	0.37	□□□□□ -2.35
UFE1	YOR075W	TRA1	P38811	3744 aa		0.36	□□□□□ -2.35
UFE1	YOR075W	PRS3	P38689	320 aa	Known RBP	0.36	□□□□□ -2.35
UFE1	YOR075W	TVP18	Q04767	167 aa		0.36	□□□□□ -2.35
UFE1	YOR075W	NKP2	Q06162	153 aa		0.36	□□□□□ -2.35
UFE1	YOR075W	FLO1	P32768	1537 aa		0.36	□□□□□ -2.35
UFE1	YOR075W	RAD50	P12753	1312 aa		0.36	□□□□□ -2.35
UFE1	YOR075W	YRF1-3	P0CX14	1859 aa		0.35	□□□□□ -2.35
UFE1	YOR075W	YRF1-7	P0CX15	1859 aa		0.35	□□□□□ -2.35
UFE1	YOR075W	YRF1-6	P53819	1859 aa		0.35	□□□□□ -2.35
UFE1	YOR075W	FIG2	P25653	1609 aa		0.35	□□□□□ -2.35
UFE1	YOR075W	TOR1	P35169	2470 aa		0.35	□□□□□ -2.35
UFE1	YOR075W	PAU21	P0CE86	164 aa		0.35	□□□□□ -2.35
UFE1	YOR075W	PAU22	P0CE87	164 aa		0.35	□□□□□ -2.35
UFE1	YOR075W	SRX1	P36077	127 aa		0.35	□□□□□ -2.35
UFE1	YOR075W	TRS20	P38334	175 aa		0.35	□□□□□ -2.35
UFE1	YOR075W	GIM4	P40005	111 aa	Known RBP	0.35	□□□□□ -2.35
UFE1	YOR075W	RPS29B	P41058	56 aa	Known RBP	0.35	□□□□□ -2.35
UFE1	YOR075W	YGR017W	P53210	297 aa		0.35	□□□□□ -2.35
UFE1	YOR075W	FCF2	Q12035	217 aa	Predicted RBP	0.35	□□□□□ -2.35
UFE1	YOR075W	TY4B-H	P0C2J7	1802 aa		0.35	□□□□□ -2.35
UFE1	YOR075W	RIM15	P43565	1770 aa		0.34	□□□□□ -2.35
UFE1	YOR075W	FKS3	Q04952	1785 aa		0.34	□□□□□ -2.35
UFE1	YOR075W	CUP1-1	P0CX80	61 aa		0.34	□□□□□ -2.36
UFE1	YOR075W	CUP1-2	P0CX81	61 aa		0.34	□□□□□ -2.36
UFE1	YOR075W	FAS2	P19097	1887 aa	Known RBP	0.34	□□□□□ -2.36
UFE1	YOR075W	IRA2	P19158	3079 aa		0.34	□□□□□ -2.36
UFE1	YOR075W	HYM1	P32464	399 aa		0.34	□□□□□ -2.36
UFE1	YOR075W	TEL1	P38110	2787 aa		0.34	□□□□□ -2.36
UFE1	YOR075W	PHS1	P40857	217 aa		0.34	□□□□□ -2.36
UFE1	YOR075W	YJR128W	P47162	119 aa		0.34	□□□□□ -2.36
UFE1	YOR075W	PMD1	P32634	1753 aa		0.34	□□□□□ -2.36
UFE1	YOR075W	NUM1	Q00402	2748 aa		0.33	□□□□□ -2.36
UFE1	YOR075W	IRA1	P18963	3092 aa		0.33	□□□□□ -2.36
UFE1	YOR075W	DYN1	P36022	4092 aa		0.33	□□□□□ -2.36
UFE1	YOR075W	RPL36B	O14455	100 aa	Known RBP	0.33	□□□□□ -2.36
UFE1	YOR075W	RPL36A	P05745	100 aa	Predicted RBP	0.33	□□□□□ -2.36
UFE1	YOR075W	RPL22A	P05749	121 aa	Known RBP	0.33	□□□□□ -2.36
UFE1	YOR075W	SUA7	P29055	345 aa	Predicted RBP	0.33	□□□□□ -2.36
UFE1	YOR075W	TIM8	P57744	87 aa		0.33	□□□□□ -2.36
UFE1	YOR075W	YNL277W-A	Q3E7Z0	62 aa		0.33	□□□□□ -2.36
UFE1	YOR075W	SEN1	Q00416	2231 aa	Known RBP	0.33	□□□□□ -2.36
UFE1	YOR075W	GCN1	P33892	2672 aa	Known RBP	0.32	□□□□□ -2.36
UFE1	YOR075W	UTP10	P42945	1769 aa	Known RBP	0.32	□□□□□ -2.36
UFE1	YOR075W	HKR1	P41809	1802 aa		0.32	□□□□□ -2.36
UFE1	YOR075W	FMP27	Q06179	2628 aa		0.32	□□□□□ -2.36
UFE1	YOR075W	YBR056W-A	I2HB52	66 aa		0.32	□□□□□ -2.36
UFE1	YOR075W	EMP24	P32803	203 aa	Known RBP	0.32	□□□□□ -2.36
UFE1	YOR075W	CYC2	P38909	366 aa		0.32	□□□□□ -2.36
UFE1	YOR075W	YIL163C	P40448	117 aa		0.32	□□□□□ -2.36
UFE1	YOR075W	MPC1	P53157	130 aa	Known RBP	0.32	□□□□□ -2.36
UFE1	YOR075W	ERV14	P53173	138 aa		0.32	□□□□□ -2.36
UFE1	YOR075W	CNL1	Q06333	122 aa		0.32	□□□□□ -2.36
UFE1	YOR075W	HPA2	Q06592	156 aa		0.32	□□□□□ -2.36
UFE1	YOR075W	SWC7	Q06707	132 aa		0.32	□□□□□ -2.36
UFE1	YOR075W	OCA6	Q12454	224 aa		0.32	□□□□□ -2.36
UFE1	YOR075W	YIL046W-A	Q3E7Z4	54 aa		0.32	□□□□□ -2.36
UFE1	YOR075W	MEC1	P38111	2368 aa		0.32	□□□□□ -2.36
UFE1	YOR075W	MLP1	Q02455	1875 aa	Known RBP	0.31	□□□□□ -2.36
UFE1	YOR075W	MDN1	Q12019	4910 aa	Known RBP	0.31	□□□□□ -2.36
UFE1	YOR075W	SEC59	P20048	519 aa		0.31	□□□□□ -2.36
UFE1	YOR075W	RPS20	P38701	121 aa	Known RBP	0.31	□□□□□ -2.36
UFE1	YOR075W	YIL086C	P40503	102 aa		0.31	□□□□□ -2.36
UFE1	YOR075W	YDR278C	Q05612	105 aa		0.31	□□□□□ -2.36
UFE1	YOR075W	ENV10	Q99382	181 aa		0.31	□□□□□ -2.36
UFE1	YOR075W	CSF1	Q12150	2958 aa		0.31	□□□□□ -2.36
UFE1	YOR075W	YCR099C	P25657	155 aa		0.3	□□□□□ -2.36
UFE1	YOR075W	BLM10	P43583	2143 aa		0.3	□□□□□ -2.36
UFE1	YOR075W	SFT1	P43682	97 aa		0.3	□□□□□ -2.36
UFE1	YOR075W	RPL22B	P56628	122 aa	Known RBP	0.3	□□□□□ -2.36
UFE1	YOR075W	SAE3	P89114	91 aa		0.3	□□□□□ -2.36
UFE1	YOR075W	ARL3	Q02804	198 aa		0.3	□□□□□ -2.36
UFE1	YOR075W	YLR361C-A	Q3E795	98 aa		0.3	□□□□□ -2.36
UFE1	YOR075W	Q0144	Q9ZZW2	109 aa		0.3	□□□□□ -2.36
UFE1	YOR075W	RPS27A	P35997	82 aa	Known RBP	0.29	□□□□□ -2.36
UFE1	YOR075W	YKL044W	P36092	106 aa		0.29	□□□□□ -2.36
UFE1	YOR075W	RPS27B	P38711	82 aa		0.29	□□□□□ -2.36
UFE1	YOR075W	SMX2	P40204	77 aa	Known RBP	0.29	□□□□□ -2.36
UFE1	YOR075W	YGL204C	P53089	101 aa		0.29	□□□□□ -2.36
UFE1	YOR075W	YGR042W	P53227	271 aa		0.29	□□□□□ -2.36
UFE1	YOR075W	YIL014C-A	Q02598	104 aa		0.29	□□□□□ -2.36
UFE1	YOR075W	NHP10	Q03435	203 aa		0.29	□□□□□ -2.36
UFE1	YOR075W	GPI19	Q04082	140 aa		0.29	□□□□□ -2.36
UFE1	YOR075W	YOR097C	Q12274	175 aa	Predicted RBP	0.29	□□□□□ -2.36
UFE1	YOR075W	YOR376W-A	Q3E805	51 aa		0.29	□□□□□ -2.36
UFE1	YOR075W	YOR032W-A	Q8TGS1	66 aa		0.29	□□□□□ -2.36
UFE1	YOR075W	UTP20	P35194	2493 aa	Known RBP	0.29	□□□□□ -2.36
UFE1	YOR075W	POL2	P21951	2222 aa	Known RBP	0.28	□□□□□ -2.36
UFE1	YOR075W	YFR010W-A	P0C5N0	62 aa		0.28	□□□□□ -2.36
UFE1	YOR075W	YHR214C-D	P0CX93	97 aa		0.28	□□□□□ -2.36
UFE1	YOR075W	YBR032W	P38223	100 aa		0.28	□□□□□ -2.36
UFE1	YOR075W	GAT4	P40569	121 aa		0.28	□□□□□ -2.36
UFE1	YOR075W	YFR035C	P43608	114 aa		0.28	□□□□□ -2.36

Retrieved 100 of 5,963 RNA–protein pairs in 42.2 ms