RNA–Protein interactions for RNA: YLR147C

SMD3, Transcript of Core Sm protein Sm D3, yeast

Gene SMD3, Length 306 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMD3	YLR147C	RPS1A	P33442	255 aa	Known RBP	0.48	□□□□□ -2.33
SMD3	YLR147C	RPL14A	P36105	138 aa	Known RBP	0.48	□□□□□ -2.33
SMD3	YLR147C	SFT2	P38166	215 aa		0.48	□□□□□ -2.33
SMD3	YLR147C	RPL14B	P38754	138 aa	Known RBP	0.48	□□□□□ -2.33
SMD3	YLR147C	GIM4	P40005	111 aa	Known RBP	0.48	□□□□□ -2.33
SMD3	YLR147C	YIR020C	P40575	100 aa		0.48	□□□□□ -2.33
SMD3	YLR147C	LST8	P41318	303 aa		0.48	□□□□□ -2.33
SMD3	YLR147C	YGL204C	P53089	101 aa		0.48	□□□□□ -2.33
SMD3	YLR147C	BRP1	P53194	125 aa		0.48	□□□□□ -2.33
SMD3	YLR147C	MGR2	Q02889	113 aa		0.48	□□□□□ -2.33
SMD3	YLR147C	YMR122C	Q03879	124 aa		0.48	□□□□□ -2.33
SMD3	YLR147C	CSN9	Q03981	162 aa		0.48	□□□□□ -2.33
SMD3	YLR147C	NAT5	Q08689	176 aa		0.48	□□□□□ -2.33
SMD3	YLR147C	MHF1	Q3E835	90 aa		0.48	□□□□□ -2.33
SMD3	YLR147C	RPS22A	P0C0W1	130 aa	Known RBP	0.47	□□□□□ -2.33
SMD3	YLR147C	NMT1	P14743	455 aa		0.47	□□□□□ -2.33
SMD3	YLR147C	FUN14	P18411	198 aa		0.47	□□□□□ -2.33
SMD3	YLR147C	YCR050C	P25630	102 aa		0.47	□□□□□ -2.33
SMD3	YLR147C	AUA1	P32450	94 aa		0.47	□□□□□ -2.33
SMD3	YLR147C	QCR10	P37299	77 aa		0.47	□□□□□ -2.33
SMD3	YLR147C	YJL009W	P47078	108 aa		0.47	□□□□□ -2.33
SMD3	YLR147C	YGR042W	P53227	271 aa		0.47	□□□□□ -2.33
SMD3	YLR147C	YPL067C	Q02754	198 aa		0.47	□□□□□ -2.33
SMD3	YLR147C	ELC1	Q03071	99 aa		0.47	□□□□□ -2.33
SMD3	YLR147C	IRC21	Q04772	201 aa		0.47	□□□□□ -2.33
SMD3	YLR147C	YDR278C	Q05612	105 aa		0.47	□□□□□ -2.33
SMD3	YLR147C	RTR2	Q12378	196 aa		0.47	□□□□□ -2.33
SMD3	YLR147C	RPS22B	Q3E7Y3	130 aa	Known RBP	0.47	□□□□□ -2.33
SMD3	YLR147C	YNL277W-A	Q3E7Z0	62 aa		0.47	□□□□□ -2.33
SMD3	YLR147C	Q0144	Q9ZZW2	109 aa		0.47	□□□□□ -2.33
SMD3	YLR147C	MOT1	P32333	1867 aa		0.46	□□□□□ -2.34
SMD3	YLR147C	YFR010W-A	P0C5N0	62 aa		0.46	□□□□□ -2.34
SMD3	YLR147C	SUA7	P29055	345 aa	Predicted RBP	0.46	□□□□□ -2.34
SMD3	YLR147C	TRS20	P38334	175 aa		0.46	□□□□□ -2.34
SMD3	YLR147C	RPS20	P38701	121 aa	Known RBP	0.46	□□□□□ -2.34
SMD3	YLR147C	YAL064W	P39711	94 aa		0.46	□□□□□ -2.34
SMD3	YLR147C	SDH7	Q04401	133 aa		0.46	□□□□□ -2.34
SMD3	YLR147C	YLR296W	Q05898	108 aa		0.46	□□□□□ -2.34
SMD3	YLR147C	YLR361C-A	Q3E795	98 aa		0.46	□□□□□ -2.34
SMD3	YLR147C	PFY1	P07274	126 aa		0.45	□□□□□ -2.34
SMD3	YLR147C	PAU21	P0CE86	164 aa		0.45	□□□□□ -2.34
SMD3	YLR147C	PAU22	P0CE87	164 aa		0.45	□□□□□ -2.34
SMD3	YLR147C	UTP11	P34247	250 aa	Predicted RBP	0.45	□□□□□ -2.34
SMD3	YLR147C	MRPL11	P36521	249 aa	Predicted RBP	0.45	□□□□□ -2.34
SMD3	YLR147C	PHS1	P40857	217 aa		0.45	□□□□□ -2.34
SMD3	YLR147C	YGL149W	P53116	101 aa		0.45	□□□□□ -2.34
SMD3	YLR147C	YGR017W	P53210	297 aa		0.45	□□□□□ -2.34
SMD3	YLR147C	TIM8	P57744	87 aa		0.45	□□□□□ -2.34
SMD3	YLR147C	MIX14	Q04341	121 aa		0.45	□□□□□ -2.34
SMD3	YLR147C	TVP18	Q04767	167 aa		0.45	□□□□□ -2.34
SMD3	YLR147C	SPC2	Q04969	178 aa		0.45	□□□□□ -2.34
SMD3	YLR147C	COA4	Q05809	96 aa		0.45	□□□□□ -2.34
SMD3	YLR147C	ATP14	Q12349	124 aa		0.45	□□□□□ -2.34
SMD3	YLR147C	KTI11	Q3E840	82 aa		0.45	□□□□□ -2.34
SMD3	YLR147C	YOR032W-A	Q8TGS1	66 aa		0.45	□□□□□ -2.34
SMD3	YLR147C	RTC6	O14464	93 aa		0.44	□□□□□ -2.34
SMD3	YLR147C	HAP3	P13434	144 aa		0.44	□□□□□ -2.34
SMD3	YLR147C	ACP1	P32463	125 aa		0.44	□□□□□ -2.34
SMD3	YLR147C	HYM1	P32464	399 aa		0.44	□□□□□ -2.34
SMD3	YLR147C	RPS27A	P35997	82 aa	Known RBP	0.44	□□□□□ -2.34
SMD3	YLR147C	POP7	P38291	140 aa		0.44	□□□□□ -2.34
SMD3	YLR147C	AIM4	P38305	123 aa	Predicted RBP	0.44	□□□□□ -2.34
SMD3	YLR147C	RPS27B	P38711	82 aa		0.44	□□□□□ -2.34
SMD3	YLR147C	SFT1	P43682	97 aa		0.44	□□□□□ -2.34
SMD3	YLR147C	MPC1	P53157	130 aa	Known RBP	0.44	□□□□□ -2.34
SMD3	YLR147C	CNL1	Q06333	122 aa		0.44	□□□□□ -2.34
SMD3	YLR147C	GTT2	Q12390	233 aa		0.44	□□□□□ -2.34
SMD3	YLR147C	GSP1	P32835	219 aa	Known RBP	0.43	□□□□□ -2.34
SMD3	YLR147C	AIM18	P38884	321 aa		0.43	□□□□□ -2.34
SMD3	YLR147C	HSP10	P38910	106 aa		0.43	□□□□□ -2.34
SMD3	YLR147C	YMR141C	P40211	102 aa		0.43	□□□□□ -2.34
SMD3	YLR147C	FIT3	Q08907	204 aa		0.43	□□□□□ -2.34
SMD3	YLR147C	COA6	Q3E846	104 aa		0.43	□□□□□ -2.34
SMD3	YLR147C	BPH1	P25356	2167 aa		0.43	□□□□□ -2.34
SMD3	YLR147C	YBR013C	P38215	129 aa		0.42	□□□□□ -2.34
SMD3	YLR147C	DYN2	Q02647	92 aa		0.42	□□□□□ -2.34
SMD3	YLR147C	HUG1	Q6Q5K6	68 aa		0.42	□□□□□ -2.34
SMD3	YLR147C	BLM10	P43583	2143 aa		0.41	□□□□□ -2.34
SMD3	YLR147C	RPL36B	O14455	100 aa	Known RBP	0.41	□□□□□ -2.34
SMD3	YLR147C	RPL36A	P05745	100 aa	Predicted RBP	0.41	□□□□□ -2.34
SMD3	YLR147C	YSF3	P0C074	85 aa	Predicted RBP	0.41	□□□□□ -2.34
SMD3	YLR147C	MVB12	P42939	101 aa		0.41	□□□□□ -2.34
SMD3	YLR147C	MIC27	P50945	234 aa		0.41	□□□□□ -2.34
SMD3	YLR147C	ERV14	P53173	138 aa		0.41	□□□□□ -2.34
SMD3	YLR147C	LDB18	Q07887	179 aa		0.41	□□□□□ -2.34
SMD3	YLR147C	SEC59	P20048	519 aa		0.4	□□□□□ -2.35
SMD3	YLR147C	YKL044W	P36092	106 aa		0.4	□□□□□ -2.35
SMD3	YLR147C	SAE3	P89114	91 aa		0.4	□□□□□ -2.35
SMD3	YLR147C	NKP2	Q06162	153 aa		0.4	□□□□□ -2.35
SMD3	YLR147C	YCL048W-A	Q2V2Q2	79 aa		0.4	□□□□□ -2.35
SMD3	YLR147C	SLO1	Q3E784	85 aa		0.4	□□□□□ -2.35
SMD3	YLR147C	MED11	Q99278	115 aa		0.4	□□□□□ -2.35
SMD3	YLR147C	YHR214C-D	P0CX93	97 aa		0.39	□□□□□ -2.35
SMD3	YLR147C	MRPL31	P14063	131 aa	Predicted RBP	0.39	□□□□□ -2.35
SMD3	YLR147C	MRP49	P32388	137 aa		0.39	□□□□□ -2.35
SMD3	YLR147C	YIL163C	P40448	117 aa		0.39	□□□□□ -2.35
SMD3	YLR147C	RPS29A	P41057	56 aa	Known RBP	0.39	□□□□□ -2.35
SMD3	YLR147C	YFR035C	P43608	114 aa		0.39	□□□□□ -2.35
SMD3	YLR147C	FCF2	Q12035	217 aa	Predicted RBP	0.39	□□□□□ -2.35
SMD3	YLR147C	YLR118C	Q12354	227 aa		0.39	□□□□□ -2.35

Retrieved 100 of 5,963 RNA–protein pairs in 25.9 ms