RNA–Protein interactions for RNA: YJL154C

VPS35, Transcript of Endosomal subunit of membrane-associated retromer complex, yeastyeast

Gene VPS35, Length 2,835 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS35YJL154C TVP23P38962 199 aa1.3□□□□□ -2.2
VPS35YJL154C CYB5P40312 120 aa1.3□□□□□ -2.2
VPS35YJL154C KNH1P50112 268 aa1.3□□□□□ -2.2
VPS35YJL154C MPC1P53157 130 aaKnown RBP1.3□□□□□ -2.2
VPS35YJL154C YOR381W-AQ3E804 55 aa1.3□□□□□ -2.2
VPS35YJL154C HFA1P32874 2273 aa1.3□□□□□ -2.2
VPS35YJL154C PAI3P01094 68 aa1.3□□□□□ -2.2
VPS35YJL154C MPC3P53311 146 aa1.3□□□□□ -2.2
VPS35YJL154C LIP1Q03579 150 aa1.3□□□□□ -2.2
VPS35YJL154C RRT15Q3E811 62 aa1.3□□□□□ -2.2
VPS35YJL154C MOT1P32333 1867 aa1.3□□□□□ -2.2
VPS35YJL154C QCR10P37299 77 aa1.29□□□□□ -2.2
VPS35YJL154C SNN1P48232 102 aa1.29□□□□□ -2.2
VPS35YJL154C RIM9Q04734 239 aa1.29□□□□□ -2.2
VPS35YJL154C ATG40Q99325 256 aa1.29□□□□□ -2.2
VPS35YJL154C YHL018WP38744 120 aaPredicted RBP1.29□□□□□ -2.2
VPS35YJL154C YNL217WP40152 326 aa1.29□□□□□ -2.2
VPS35YJL154C PEP8P40335 379 aa1.29□□□□□ -2.2
VPS35YJL154C YLR296WQ05898 108 aa1.29□□□□□ -2.2
VPS35YJL154C YCR085WP25650 117 aa1.28□□□□□ -2.2
VPS35YJL154C THG1P53215 237 aaKnown RBP1.28□□□□□ -2.2
VPS35YJL154C RSM19P53733 91 aaPredicted RBP1.28□□□□□ -2.2
VPS35YJL154C ELP6Q04868 273 aa1.28□□□□□ -2.2
VPS35YJL154C MHF1Q3E835 90 aa1.28□□□□□ -2.2
VPS35YJL154C FYV5P25585 152 aa1.28□□□□□ -2.2
VPS35YJL154C NRG2P38082 220 aa1.28□□□□□ -2.2
VPS35YJL154C SMD3P43321 101 aaKnown RBP1.28□□□□□ -2.2
VPS35YJL154C SOM1Q05676 74 aa1.28□□□□□ -2.2
VPS35YJL154C PRM3Q08931 133 aa1.28□□□□□ -2.2
VPS35YJL154C MZM1Q03429 123 aaPredicted RBP1.27□□□□□ -2.21
VPS35YJL154C YMR295CQ03559 197 aa1.27□□□□□ -2.21
VPS35YJL154C NMA1Q06178 401 aaKnown RBP1.27□□□□□ -2.21
VPS35YJL154C YDL241WQ07738 123 aa1.27□□□□□ -2.21
VPS35YJL154C IRC19Q07843 230 aa1.27□□□□□ -2.21
VPS35YJL154C YOR015WQ12169 119 aa1.27□□□□□ -2.21
VPS35YJL154C SUS1Q6WNK7 96 aa1.27□□□□□ -2.21
VPS35YJL154C MDM35O60200 86 aa1.27□□□□□ -2.21
VPS35YJL154C PAU2P32612 120 aa1.27□□□□□ -2.21
VPS35YJL154C HYR1P40581 163 aaKnown RBP1.27□□□□□ -2.21
VPS35YJL154C HUR1P45820 110 aa1.27□□□□□ -2.21
VPS35YJL154C PAU12P53343 120 aa1.27□□□□□ -2.21
VPS35YJL154C ATP19P81451 68 aa1.27□□□□□ -2.21
VPS35YJL154C YDR042CQ03205 200 aa1.27□□□□□ -2.21
VPS35YJL154C YHP1Q04116 353 aa1.27□□□□□ -2.21
VPS35YJL154C YOL131WQ08270 108 aa1.27□□□□□ -2.21
VPS35YJL154C POC4Q12245 148 aaPredicted RBP1.27□□□□□ -2.21
VPS35YJL154C DAD1Q12248 94 aa1.27□□□□□ -2.21
VPS35YJL154C RIF1P29539 1916 aa1.27□□□□□ -2.21
VPS35YJL154C RPS25BP0C0T4 108 aaKnown RBP1.26□□□□□ -2.21
VPS35YJL154C SVP26P38869 228 aa1.26□□□□□ -2.21
VPS35YJL154C MIX14Q04341 121 aa1.26□□□□□ -2.21
VPS35YJL154C YHR086W-AQ3E746 53 aa1.26□□□□□ -2.21
VPS35YJL154C FZF1P32805 299 aa1.26□□□□□ -2.21
VPS35YJL154C YKR045CP36138 183 aa1.26□□□□□ -2.21
VPS35YJL154C YHR138CP38841 114 aaPredicted RBP1.26□□□□□ -2.21
VPS35YJL154C HSP10P38910 106 aa1.26□□□□□ -2.21
VPS35YJL154C YER187WP40102 141 aa1.26□□□□□ -2.21
VPS35YJL154C RPL33BP41056 107 aaKnown RBP1.26□□□□□ -2.21
VPS35YJL154C GRX5Q02784 150 aa1.26□□□□□ -2.21
VPS35YJL154C YLR363W-AQ3E747 85 aa1.26□□□□□ -2.21
VPS35YJL154C ENV10Q99382 181 aa1.26□□□□□ -2.21
VPS35YJL154C PAU19P0CE85 124 aa1.25□□□□□ -2.21
VPS35YJL154C PAU21P0CE86 164 aa1.25□□□□□ -2.21
VPS35YJL154C PAU22P0CE87 164 aa1.25□□□□□ -2.21
VPS35YJL154C PAU3P25610 124 aa1.25□□□□□ -2.21
VPS35YJL154C RPA12P32529 125 aaKnown RBP1.25□□□□□ -2.21
VPS35YJL154C PAU24P38155 120 aa1.25□□□□□ -2.21
VPS35YJL154C ATX1P38636 73 aa1.25□□□□□ -2.21
VPS35YJL154C SWM2P40342 146 aa1.25□□□□□ -2.21
VPS35YJL154C VMA21P41806 77 aa1.25□□□□□ -2.21
VPS35YJL154C CUE4Q04201 117 aaPredicted RBP1.25□□□□□ -2.21
VPS35YJL154C IRC23Q08416 157 aa1.25□□□□□ -2.21
VPS35YJL154C YPL261CQ08976 102 aa1.25□□□□□ -2.21
VPS35YJL154C YBR056W-AI2HB52 66 aa1.25□□□□□ -2.21
VPS35YJL154C YJL027CP47063 138 aaPredicted RBP1.25□□□□□ -2.21
VPS35YJL154C YIL134C-AQ45U18 67 aa1.25□□□□□ -2.21
VPS35YJL154C UBR1P19812 1950 aa1.25□□□□□ -2.21
VPS35YJL154C YHR213WP0CI67 198 aa1.25□□□□□ -2.21
VPS35YJL154C GCV3P39726 170 aaPredicted RBP1.25□□□□□ -2.21
VPS35YJL154C YGL149WP53116 101 aa1.25□□□□□ -2.21
VPS35YJL154C NAT5Q08689 176 aa1.25□□□□□ -2.21
VPS35YJL154C YMR175W-AQ3E766 64 aa1.25□□□□□ -2.21
VPS35YJL154C YHR180WP38868 163 aa1.24□□□□□ -2.21
VPS35YJL154C YEL067CP39978 195 aa1.24□□□□□ -2.21
VPS35YJL154C CYT2Q00873 224 aa1.24□□□□□ -2.21
VPS35YJL154C ICY1Q04329 127 aa1.24□□□□□ -2.21
VPS35YJL154C ATG41Q12048 136 aa1.24□□□□□ -2.21
VPS35YJL154C YDR119W-AQ2V2P9 66 aa1.24□□□□□ -2.21
VPS35YJL154C RPS25AQ3E792 108 aaPredicted RBP1.24□□□□□ -2.21
VPS35YJL154C TOM6P33448 61 aa1.24□□□□□ -2.21
VPS35YJL154C PAU16P35994 123 aa1.24□□□□□ -2.21
VPS35YJL154C ATG8P38182 117 aaRIP-Chip data1.24□□□□□ -2.21not detected
VPS35YJL154C RSM18P40033 138 aa1.24□□□□□ -2.21
VPS35YJL154C PAU15P40585 124 aa1.24□□□□□ -2.21
VPS35YJL154C BOL2P53082 120 aa1.24□□□□□ -2.21
VPS35YJL154C RPL22BP56628 122 aaKnown RBP1.24□□□□□ -2.21
VPS35YJL154C YIL014C-AQ02598 104 aa1.24□□□□□ -2.21
VPS35YJL154C AVO2Q04749 426 aa1.24□□□□□ -2.21
VPS35YJL154C PCC1Q3E833 88 aa1.24□□□□□ -2.21
VPS35YJL154C YNR034W-AQ3E841 98 aa1.24□□□□□ -2.21
Retrieved 100 of 5,963 RNA–protein pairs in 56.6 ms