RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 FFAR3O14843 346 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 AURKAO14965 403 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 KLHL41O60662 606 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 KERAO60938 352 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 PPFIA2O75334 1257 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 PIAS2O75928 621 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 ACTL6BO94805 426 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 MPOP05164 745 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 CD3EP07766 207 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 EEF1DP29692 281 aaKnown RBP6.79□□□□□ -1.32
VPS29-210ENST00000552130 TLX1P31314 330 aaPredicted RBP6.79□□□□□ -1.32
VPS29-210ENST00000552130 KRT2P35908 639 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 EIF2DP41214 584 aaKnown RBP6.79□□□□□ -1.32
VPS29-210ENST00000552130 CD151P48509 253 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 ZNF41P51814 821 aaPredicted RBP6.79□□□□□ -1.32
VPS29-210ENST00000552130 TKTL1P51854 596 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 LGALS4P56470 323 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 RPS16P62249 146 aaKnown RBP6.79□□□□□ -1.32
VPS29-210ENST00000552130 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.79□□□□□ -1.32
VPS29-210ENST00000552130 SNW1Q13573 536 aaKnown RBP6.79□□□□□ -1.32
VPS29-210ENST00000552130 EPHA7Q15375 998 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 OASLQ15646 514 aaKnown RBP6.79□□□□□ -1.32
VPS29-210ENST00000552130 SHROOM1Q2M3G4 852 aaPredicted RBP6.79□□□□□ -1.32
VPS29-210ENST00000552130 ARHGAP15Q53QZ3 475 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 BMP2KLQ5H9B9 411 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 GALNT18Q6P9A2 607 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 SLCO6A1Q86UG4 719 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 C17orf53Q8N3J3 647 aaPredicted RBP6.79□□□□□ -1.32
VPS29-210ENST00000552130 GLIS1Q8NBF1 620 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 IL17RDQ8NFM7 739 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 GABPB2Q8TAK5 448 aaPredicted RBP6.79□□□□□ -1.32
VPS29-210ENST00000552130 ETNPPLQ8TBG4 499 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 DPF2Q92785 391 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 SYAP1Q96A49 352 aaPredicted RBP6.79□□□□□ -1.32
VPS29-210ENST00000552130 PWWP2AQ96N64 755 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 PRPF18Q99633 342 aaKnown RBP6.79□□□□□ -1.32
VPS29-210ENST00000552130 ZCWPW1Q9H0M4 648 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 WNT8AQ9H1J5 351 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 PABPC3Q9H361 631 aaKnown RBP6.79□□□□□ -1.32
VPS29-210ENST00000552130 PRDM12Q9H4Q4 367 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 DECR2Q9NUI1 292 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 PI4KBQ9UBF8 816 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 UBA2Q9UBT2 640 aaPredicted RBP6.79□□□□□ -1.32
VPS29-210ENST00000552130 PSAT1Q9Y617 370 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 ARHGAP10A1A4S6 786 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 FCHO1O14526 889 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 PRICKLE3O43900 615 aaPredicted RBP6.78□□□□□ -1.32
VPS29-210ENST00000552130 SYNCRIPO60506 623 aaKnown RBP6.78□□□□□ -1.32
VPS29-210ENST00000552130 SEC22BO75396 215 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 RPLP2P05387 115 aaKnown RBP6.78□□□□□ -1.32
VPS29-210ENST00000552130 CLEC3BP05452 202 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 SYPP08247 313 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 TNNT1P13805 278 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 ACTN3Q08043 901 aaPredicted RBP6.78□□□□□ -1.32
VPS29-210ENST00000552130 C17orf67Q0P5P2 114 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 MPP3Q13368 585 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 LAPTM5Q13571 262 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 NAA25Q14CX7 972 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 BAK1Q16611 211 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 C2orf76Q3KRA6 126 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 ARHGAP36Q6ZRI8 547 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 HEATR3Q7Z4Q2 680 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 ZFPM1Q8IX07 1006 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 KIAA2013Q8IYS2 634 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 C10orf53Q8N6V4 93 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 GRK7Q8WTQ7 553 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 SDCCAG3Q96C92 435 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 ZNF653Q96CK0 615 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 LRRC46Q96FV0 321 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 VPS39Q96JC1 886 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 PPP1R13BQ96KQ4 1090 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 FAM167AQ96KS9 214 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 C16orf92Q96LL3 132 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 NDST4Q9H3R1 872 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 COPS7BQ9H9Q2 264 aaPredicted RBP6.78□□□□□ -1.32
VPS29-210ENST00000552130 CNNM1Q9NRU3 951 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 TBC1D14Q9P2M4 693 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 ACSL6Q9UKU0 697 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 CNOT11Q9UKZ1 510 aaKnown RBP6.78□□□□□ -1.32
VPS29-210ENST00000552130 TRIM17Q9Y577 477 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 PCDHB1Q9Y5F3 818 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 B3GALT1Q9Y5Z6 326 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 AP1M2Q9Y6Q5 423 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 LMTK3Q96Q04 1460 aa6.78□□□□□ -1.32
VPS29-210ENST00000552130 A0A0U1RQK1 487 aa6.77□□□□□ -1.33
VPS29-210ENST00000552130 ZNF320A2RRD8 509 aa6.77□□□□□ -1.33
VPS29-210ENST00000552130 WTIPA6NIX2 430 aaPredicted RBP6.77□□□□□ -1.33
VPS29-210ENST00000552130 SCDO00767 359 aa6.77□□□□□ -1.33
VPS29-210ENST00000552130 ASAP2O43150 1006 aa6.77□□□□□ -1.33
VPS29-210ENST00000552130 SIGLEC6O43699 453 aa6.77□□□□□ -1.33
VPS29-210ENST00000552130 PRPSAP2O60256 369 aa6.77□□□□□ -1.33
VPS29-210ENST00000552130 FKTNO75072 461 aa6.77□□□□□ -1.33
VPS29-210ENST00000552130 BBOX1O75936 387 aa6.77□□□□□ -1.33
VPS29-210ENST00000552130 KIAA0754O94854 1291 aa6.77□□□□□ -1.33
VPS29-210ENST00000552130 PRAMEF1O95521 474 aa6.77□□□□□ -1.33
VPS29-210ENST00000552130 MT-ND5P03915 603 aa6.77□□□□□ -1.33
VPS29-210ENST00000552130 TMIGD3P0DMS9 266 aaPredicted RBP6.77□□□□□ -1.33
VPS29-210ENST00000552130 CYP2A6P11509 494 aaPredicted RBP6.77□□□□□ -1.33
VPS29-210ENST00000552130 C6P13671 934 aa6.77□□□□□ -1.33
VPS29-210ENST00000552130 BTF3P20290 206 aaKnown RBP6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms