RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 SLC20A1Q8WUM9 679 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 DDX1Q92499 740 aaKnown RBP12.27□□□□□ -0.45
YBX3-213ENST00000542641 KCNK16Q96T55 309 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 DNAJC7Q99615 494 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 SMOQ99835 787 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 AGPAT1Q99943 283 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 HAUS4Q9H6D7 363 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 DMAP1Q9NPF5 467 aaPredicted RBP12.27□□□□□ -0.45
YBX3-213ENST00000542641 NOCTQ9UK39 431 aaKnown RBP12.27□□□□□ -0.45
YBX3-213ENST00000542641 PCDHGC3Q9UN70 934 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 YIPF1Q9Y548 306 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 INSL5Q9Y5Q6 135 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 BZW2Q9Y6E2 419 aaKnown RBP12.27□□□□□ -0.45
YBX3-213ENST00000542641 MYO9BQ13459 2157 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 MYO7AQ13402 2215 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 F8VP50 259 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 RFPL2O75678 378 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 ZMYND10O75800 440 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 BEST1O76090 585 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 GLP2RO95838 553 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 SETSIPP0DME0 302 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 CHRNB2P17787 502 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 PRKCIP41743 596 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 GPR15P49685 360 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 EPHB3P54753 998 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 PDE4CQ08493 712 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 BST2Q10589 180 aaKnown RBP12.26□□□□□ -0.45
YBX3-213ENST00000542641 PLD1Q13393 1074 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 ARID5BQ14865 1188 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 TDRD12Q587J7 1177 aaKnown RBP12.26□□□□□ -0.45
YBX3-213ENST00000542641 SDHAF4Q5VUM1 108 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 GPR152Q8TDT2 470 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 GIPC2Q8TF65 315 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 PPM1EQ8WY54 764 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 C8orf48Q96LL4 319 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 LHX5Q9H2C1 402 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 CSNK1G1Q9HCP0 422 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 TMEM30AQ9NV96 361 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 SEPT11Q9NVA2 429 aaKnown RBP12.26□□□□□ -0.45
YBX3-213ENST00000542641 DZANK1Q9NVP4 752 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 CLDND1Q9NY35 253 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 CEP83Q9Y592 693 aa12.26□□□□□ -0.45
YBX3-213ENST00000542641 XPO1O14980 1071 aaKnown RBP12.25□□□□□ -0.45
YBX3-213ENST00000542641 ATF6P18850 670 aa12.25□□□□□ -0.45
YBX3-213ENST00000542641 TNFAIP3P21580 790 aa12.25□□□□□ -0.45
YBX3-213ENST00000542641 GPD2P43304 727 aa12.25□□□□□ -0.45
YBX3-213ENST00000542641 FMO1Q01740 532 aa12.25□□□□□ -0.45
YBX3-213ENST00000542641 VEPH1Q14D04 833 aa12.25□□□□□ -0.45
YBX3-213ENST00000542641 SKIV2LQ15477 1246 aaKnown RBP12.25□□□□□ -0.45
YBX3-213ENST00000542641 TAF12Q16514 161 aa12.25□□□□□ -0.45
YBX3-213ENST00000542641 MEA1Q16626 185 aa12.25□□□□□ -0.45
YBX3-213ENST00000542641 CTC1Q2NKJ3 1217 aa12.25□□□□□ -0.45
YBX3-213ENST00000542641 PKDCCQ504Y2 493 aa12.25□□□□□ -0.45
YBX3-213ENST00000542641 HGSNATQ68CP4 663 aa12.25□□□□□ -0.45
YBX3-213ENST00000542641 WDR59Q6PJI9 974 aa12.25□□□□□ -0.45
YBX3-213ENST00000542641 ZNF571Q7Z3V5 609 aaPredicted RBP12.25□□□□□ -0.45
YBX3-213ENST00000542641 ELMOD1Q8N336 334 aa12.25□□□□□ -0.45
YBX3-213ENST00000542641 C12orf76Q8N812 135 aaPredicted RBP12.25□□□□□ -0.45
YBX3-213ENST00000542641 TMEM35BQ8NCS4 154 aa12.25□□□□□ -0.45
YBX3-213ENST00000542641 ZMIZ2Q8NF64 920 aa12.25□□□□□ -0.45
YBX3-213ENST00000542641 SECISBP2LQ93073 1101 aaKnown RBP12.25□□□□□ -0.45
YBX3-213ENST00000542641 PABPC5Q96DU9 382 aaKnown RBP12.25□□□□□ -0.45
YBX3-213ENST00000542641 SPATA17Q96L03 361 aa12.25□□□□□ -0.45
YBX3-213ENST00000542641 CEP295NLQ96MC4 621 aa12.25□□□□□ -0.45
YBX3-213ENST00000542641 ZNF512Q96ME7 567 aaPredicted RBP12.25□□□□□ -0.45
YBX3-213ENST00000542641 PANX2Q96RD6 677 aa12.25□□□□□ -0.45
YBX3-213ENST00000542641 UBXN6Q9BZV1 441 aa12.25□□□□□ -0.45
YBX3-213ENST00000542641 SFXN1Q9H9B4 322 aa12.25□□□□□ -0.45
YBX3-213ENST00000542641 ZDHHC7Q9NXF8 308 aa12.25□□□□□ -0.45
YBX3-213ENST00000542641 BOLA1Q9Y3E2 137 aa12.25□□□□□ -0.45
YBX3-213ENST00000542641 PRRC2BQ5JSZ5 2229 aaKnown RBP12.25□□□□□ -0.45
YBX3-213ENST00000542641 CCDC195A0A1B0GUA6 201 aa12.24□□□□□ -0.45
YBX3-213ENST00000542641 TULP2O00295 520 aa12.24□□□□□ -0.45
YBX3-213ENST00000542641 CCL16O15467 120 aa12.24□□□□□ -0.45
YBX3-213ENST00000542641 XYLBO75191 536 aa12.24□□□□□ -0.45
YBX3-213ENST00000542641 LSM8O95777 96 aaKnown RBP12.24□□□□□ -0.45
YBX3-213ENST00000542641 PLEKP08567 350 aaPredicted RBP12.24□□□□□ -0.45
YBX3-213ENST00000542641 HNRNPA1P09651 372 aaKnown RBP eCLIP12.24□□□□□ -0.45
YBX3-213ENST00000542641 HOXB8P17481 243 aaPredicted RBP12.24□□□□□ -0.45
YBX3-213ENST00000542641 HOXA9P31269 272 aa12.24□□□□□ -0.45
YBX3-213ENST00000542641 PLA2G4AP47712 749 aa12.24□□□□□ -0.45
YBX3-213ENST00000542641 GSDMDP57764 484 aa12.24□□□□□ -0.45
YBX3-213ENST00000542641 COL19A1Q14993 1142 aa12.24□□□□□ -0.45
YBX3-213ENST00000542641 ANKRD54Q6NXT1 300 aa12.24□□□□□ -0.45
YBX3-213ENST00000542641 PMF1Q6P1K2 205 aa12.24□□□□□ -0.45
YBX3-213ENST00000542641 TMC5Q6UXY8 1006 aa12.24□□□□□ -0.45
YBX3-213ENST00000542641 TRIM72Q6ZMU5 477 aa12.24□□□□□ -0.45
YBX3-213ENST00000542641 DENND5BQ6ZUT9 1274 aa12.24□□□□□ -0.45
YBX3-213ENST00000542641 DNAJB7Q7Z6W7 309 aaPredicted RBP12.24□□□□□ -0.45
YBX3-213ENST00000542641 ITIH5Q86UX2 942 aa12.24□□□□□ -0.45
YBX3-213ENST00000542641 PIGZQ86VD9 579 aa12.24□□□□□ -0.45
YBX3-213ENST00000542641 VPS36Q86VN1 386 aa12.24□□□□□ -0.45
YBX3-213ENST00000542641 NUP93Q8N1F7 819 aa12.24□□□□□ -0.45
YBX3-213ENST00000542641 WDTC1Q8N5D0 677 aa12.24□□□□□ -0.45
YBX3-213ENST00000542641 SLC35F5Q8WV83 523 aa12.24□□□□□ -0.45
YBX3-213ENST00000542641 NOX5Q96PH1 765 aa12.24□□□□□ -0.45
YBX3-213ENST00000542641 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.24□□□□□ -0.45
YBX3-213ENST00000542641 PRKD2Q9BZL6 878 aa12.24□□□□□ -0.45
YBX3-213ENST00000542641 PIDD1Q9HB75 910 aa12.24□□□□□ -0.45
YBX3-213ENST00000542641 CLEC1BQ9P126 229 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms