RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeast

Gene RUB1, Length 234 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RUB1	YDR139C	SUI1	P32911	108 aa	Known RBP	0.54	□□□□□ -2.32
RUB1	YDR139C	SFT2	P38166	215 aa		0.54	□□□□□ -2.32
RUB1	YDR139C	UTP11	P34247	250 aa	Predicted RBP	0.53	□□□□□ -2.32
RUB1	YDR139C	LSM8	P47093	109 aa	Known RBP	0.53	□□□□□ -2.32
RUB1	YDR139C	YPL067C	Q02754	198 aa		0.53	□□□□□ -2.32
RUB1	YDR139C	YOR385W	Q08909	290 aa		0.53	□□□□□ -2.32
RUB1	YDR139C	PET54	P10834	293 aa		0.52	□□□□□ -2.33
RUB1	YDR139C	SPG1	P50088	95 aa		0.52	□□□□□ -2.33
RUB1	YDR139C	EMC4	P53073	190 aa		0.52	□□□□□ -2.33
RUB1	YDR139C	PFY1	P07274	126 aa		0.51	□□□□□ -2.33
RUB1	YDR139C	MRPL44	P19956	98 aa		0.51	□□□□□ -2.33
RUB1	YDR139C	MOG1	P47123	218 aa		0.51	□□□□□ -2.33
RUB1	YDR139C	YOR1	P53049	1477 aa		0.51	□□□□□ -2.33
RUB1	YDR139C	YDR366C	P87287	132 aa		0.51	□□□□□ -2.33
RUB1	YDR139C	YBR013C	P38215	129 aa		0.5	□□□□□ -2.33
RUB1	YDR139C	AIM4	P38305	123 aa	Predicted RBP	0.49	□□□□□ -2.33
RUB1	YDR139C	MIC27	P50945	234 aa		0.49	□□□□□ -2.33
RUB1	YDR139C	BRP1	P53194	125 aa		0.49	□□□□□ -2.33
RUB1	YDR139C	YMR320W	Q04897	101 aa		0.49	□□□□□ -2.33
RUB1	YDR139C	GSC2	P40989	1895 aa		0.48	□□□□□ -2.33
RUB1	YDR139C	RPS1A	P33442	255 aa	Known RBP	0.48	□□□□□ -2.33
RUB1	YDR139C	YGL149W	P53116	101 aa		0.48	□□□□□ -2.33
RUB1	YDR139C	SMD2	Q06217	110 aa	Known RBP	0.47	□□□□□ -2.33
RUB1	YDR139C	MRPL11	P36521	249 aa	Predicted RBP	0.46	□□□□□ -2.34
RUB1	YDR139C	YLR296W	Q05898	108 aa		0.46	□□□□□ -2.34
RUB1	YDR139C	LAA1	P39526	2014 aa		0.45	□□□□□ -2.34
RUB1	YDR139C	YSF3	P0C074	85 aa	Predicted RBP	0.45	□□□□□ -2.34
RUB1	YDR139C	HHO1	P53551	258 aa		0.45	□□□□□ -2.34
RUB1	YDR139C	GTT2	Q12390	233 aa		0.45	□□□□□ -2.34
RUB1	YDR139C	MED11	Q99278	115 aa		0.45	□□□□□ -2.34
RUB1	YDR139C	TY4B-J	P47024	1803 aa		0.44	□□□□□ -2.34
RUB1	YDR139C	QCR10	P37299	77 aa		0.44	□□□□□ -2.34
RUB1	YDR139C	YGR039W	P53225	103 aa		0.44	□□□□□ -2.34
RUB1	YDR139C	COF1	Q03048	143 aa	Known RBP	0.44	□□□□□ -2.34
RUB1	YDR139C	HAP3	P13434	144 aa		0.43	□□□□□ -2.34
RUB1	YDR139C	ARC19	P33204	171 aa	Known RBP	0.43	□□□□□ -2.34
RUB1	YDR139C	LDB18	Q07887	179 aa		0.43	□□□□□ -2.34
RUB1	YDR139C	SPC3	Q12133	184 aa		0.43	□□□□□ -2.34
RUB1	YDR139C	ATP14	Q12349	124 aa		0.43	□□□□□ -2.34
RUB1	YDR139C	SNT2	P53127	1403 aa		0.42	□□□□□ -2.34
RUB1	YDR139C	MRPL31	P14063	131 aa	Predicted RBP	0.42	□□□□□ -2.34
RUB1	YDR139C	RBL2	P48606	106 aa	Known RBP	0.42	□□□□□ -2.34
RUB1	YDR139C	RPC19	P28000	142 aa	Known RBP	0.41	□□□□□ -2.34
RUB1	YDR139C	SDH7	Q04401	133 aa		0.41	□□□□□ -2.34
RUB1	YDR139C	RTC6	O14464	93 aa		0.4	□□□□□ -2.35
RUB1	YDR139C	HSP10	P38910	106 aa		0.4	□□□□□ -2.35
RUB1	YDR139C	YLR194C	Q05777	254 aa		0.4	□□□□□ -2.35
RUB1	YDR139C	GSP1	P32835	219 aa	Known RBP	0.39	□□□□□ -2.35
RUB1	YDR139C	AIM18	P38884	321 aa		0.39	□□□□□ -2.35
RUB1	YDR139C	POR2	P40478	281 aa		0.39	□□□□□ -2.35
RUB1	YDR139C	EFM5	P53200	248 aa	Known RBP	0.39	□□□□□ -2.35
RUB1	YDR139C	YRF1-3	P0CX14	1859 aa		0.38	□□□□□ -2.35
RUB1	YDR139C	YRF1-7	P0CX15	1859 aa		0.38	□□□□□ -2.35
RUB1	YDR139C	PAU21	P0CE86	164 aa		0.38	□□□□□ -2.35
RUB1	YDR139C	PAU22	P0CE87	164 aa		0.38	□□□□□ -2.35
RUB1	YDR139C	YCR050C	P25630	102 aa		0.38	□□□□□ -2.35
RUB1	YDR139C	PRS3	P38689	320 aa	Known RBP	0.38	□□□□□ -2.35
RUB1	YDR139C	YAL064W	P39711	94 aa		0.38	□□□□□ -2.35
RUB1	YDR139C	HPM1	P40481	377 aa		0.38	□□□□□ -2.35
RUB1	YDR139C	FCF2	Q12035	217 aa	Predicted RBP	0.37	□□□□□ -2.35
RUB1	YDR139C	SRX1	P36077	127 aa		0.36	□□□□□ -2.35
RUB1	YDR139C	RPL14A	P36105	138 aa	Known RBP	0.35	□□□□□ -2.35
RUB1	YDR139C	YAP3	P38749	330 aa		0.35	□□□□□ -2.35
RUB1	YDR139C	RPL14B	P38754	138 aa	Known RBP	0.35	□□□□□ -2.35
RUB1	YDR139C	ELC1	Q03071	99 aa		0.35	□□□□□ -2.35
RUB1	YDR139C	TY1B-H	O13535	1793 aa		0.34	□□□□□ -2.35
RUB1	YDR139C	SNF2	P22082	1703 aa		0.34	□□□□□ -2.36
RUB1	YDR139C	EMP24	P32803	203 aa	Known RBP	0.34	□□□□□ -2.36
RUB1	YDR139C	RPS29B	P41058	56 aa	Known RBP	0.34	□□□□□ -2.36
RUB1	YDR139C	YJR128W	P47162	119 aa		0.34	□□□□□ -2.36
RUB1	YDR139C	RPL36B	O14455	100 aa	Known RBP	0.32	□□□□□ -2.36
RUB1	YDR139C	RPL36A	P05745	100 aa	Predicted RBP	0.32	□□□□□ -2.36
RUB1	YDR139C	YIL163C	P40448	117 aa		0.32	□□□□□ -2.36
RUB1	YDR139C	YGR017W	P53210	297 aa		0.3	□□□□□ -2.36
RUB1	YDR139C	URA2	P07259	2214 aa	Known RBP	0.29	□□□□□ -2.36
RUB1	YDR139C	SUA7	P29055	345 aa	Predicted RBP	0.29	□□□□□ -2.36
RUB1	YDR139C	TVP18	Q04767	167 aa		0.29	□□□□□ -2.36
RUB1	YDR139C	PHS1	P40857	217 aa		0.28	□□□□□ -2.36
RUB1	YDR139C	YFR035C	P43608	114 aa		0.28	□□□□□ -2.36
RUB1	YDR139C	MPC1	P53157	130 aa	Known RBP	0.28	□□□□□ -2.36
RUB1	YDR139C	ARL3	Q02804	198 aa		0.28	□□□□□ -2.36
RUB1	YDR139C	HPA2	Q06592	156 aa		0.28	□□□□□ -2.36
RUB1	YDR139C	ENV10	Q99382	181 aa		0.28	□□□□□ -2.36
RUB1	YDR139C	ICS3	P47034	131 aa		0.27	□□□□□ -2.37
RUB1	YDR139C	YGR240C-A	Q3E786	66 aa		0.26	□□□□□ -2.37
RUB1	YDR139C	YNL277W-A	Q3E7Z0	62 aa		0.26	□□□□□ -2.37
RUB1	YDR139C	TRM732	Q03496	1420 aa		0.25	□□□□□ -2.37
RUB1	YDR139C	QCR6	P00127	147 aa		0.25	□□□□□ -2.37
RUB1	YDR139C	AUA1	P32450	94 aa		0.25	□□□□□ -2.37
RUB1	YDR139C	CSN9	Q03981	162 aa		0.25	□□□□□ -2.37
RUB1	YDR139C	OCA6	Q12454	224 aa		0.25	□□□□□ -2.37
RUB1	YDR139C	TRS20	P38334	175 aa		0.24	□□□□□ -2.37
RUB1	YDR139C	ERV14	P53173	138 aa		0.24	□□□□□ -2.37
RUB1	YDR139C	BLM10	P43583	2143 aa		0.23	□□□□□ -2.37
RUB1	YDR139C	LCL1	Q02786	101 aa		0.23	□□□□□ -2.37
RUB1	YDR139C	BNI1	P41832	1953 aa		0.23	□□□□□ -2.37
RUB1	YDR139C	RPL22A	P05749	121 aa	Known RBP	0.22	□□□□□ -2.37
RUB1	YDR139C	GIM4	P40005	111 aa	Known RBP	0.22	□□□□□ -2.37
RUB1	YDR139C	SEC59	P20048	519 aa		0.21	□□□□□ -2.38
RUB1	YDR139C	YEA6	P39953	335 aa		0.21	□□□□□ -2.38

Retrieved 100 of 5,963 RNA–protein pairs in 37.6 ms