RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 TDGQ13569 410 aa18.41■□□□□ 0.54
SHKBP1-212ENST00000596163 SLC5A9Q2M3M2 681 aa18.41■□□□□ 0.54
SHKBP1-212ENST00000596163 ARHGAP15Q53QZ3 475 aa18.41■□□□□ 0.54
SHKBP1-212ENST00000596163 RBM43Q6ZSC3 357 aaKnown RBP18.41■□□□□ 0.54
SHKBP1-212ENST00000596163 CREBRFQ8IUR6 639 aa18.41■□□□□ 0.54
SHKBP1-212ENST00000596163 TRIM59Q8IWR1 403 aa18.41■□□□□ 0.54
SHKBP1-212ENST00000596163 NPAS3Q8IXF0 933 aa18.41■□□□□ 0.54
SHKBP1-212ENST00000596163 CRYBG2Q8N1P7 616 aa18.41■□□□□ 0.54
SHKBP1-212ENST00000596163 SEMA4DQ92854 862 aa18.41■□□□□ 0.54
SHKBP1-212ENST00000596163 KHSRPQ92945 711 aaKnown RBP eCLIP18.41■□□□□ 0.54
SHKBP1-212ENST00000596163 ELMO3Q96BJ8 720 aa18.41■□□□□ 0.54
SHKBP1-212ENST00000596163 MCRS1Q96EZ8 462 aa18.41■□□□□ 0.54
SHKBP1-212ENST00000596163 PCED1BQ96HM7 432 aa18.41■□□□□ 0.54
SHKBP1-212ENST00000596163 LPIN3Q9BQK8 851 aa18.41■□□□□ 0.54
SHKBP1-212ENST00000596163 ELOVL4Q9GZR5 314 aa18.41■□□□□ 0.54
SHKBP1-212ENST00000596163 SDCBP2Q9H190 292 aa18.41■□□□□ 0.54
SHKBP1-212ENST00000596163 EPHX3Q9H6B9 360 aa18.41■□□□□ 0.54
SHKBP1-212ENST00000596163 APOBEC3GQ9HC16 384 aaKnown RBP18.41■□□□□ 0.54
SHKBP1-212ENST00000596163 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.41■□□□□ 0.54
SHKBP1-212ENST00000596163 EHD2Q9NZN4 543 aa18.41■□□□□ 0.54
SHKBP1-212ENST00000596163 UXTQ9UBK9 157 aaPredicted RBP18.41■□□□□ 0.54
SHKBP1-212ENST00000596163 TSC2P49815 1807 aa18.41■□□□□ 0.54
SHKBP1-212ENST00000596163 ANHXE9PGG2 379 aa18.4■□□□□ 0.54
SHKBP1-212ENST00000596163 TRIM66O15016 1216 aa18.4■□□□□ 0.54
SHKBP1-212ENST00000596163 AFPP02771 609 aaKnown RBP18.4■□□□□ 0.54
SHKBP1-212ENST00000596163 ASGR2P07307 311 aa18.4■□□□□ 0.54
SHKBP1-212ENST00000596163 BDNFP23560 247 aa18.4■□□□□ 0.54
SHKBP1-212ENST00000596163 NDST1P52848 882 aa18.4■□□□□ 0.54
SHKBP1-212ENST00000596163 YWHAEP62258 255 aaKnown RBP18.4■□□□□ 0.54
SHKBP1-212ENST00000596163 INCA1Q0VD86 236 aa18.4■□□□□ 0.54
SHKBP1-212ENST00000596163 KCNH2Q12809 1159 aa18.4■□□□□ 0.54
SHKBP1-212ENST00000596163 DDR2Q16832 855 aa18.4■□□□□ 0.54
SHKBP1-212ENST00000596163 DPCR1Q3MIW9 517 aa18.4■□□□□ 0.54
SHKBP1-212ENST00000596163 ING5Q8WYH8 240 aa18.4■□□□□ 0.54
SHKBP1-212ENST00000596163 TCEAL4Q96EI5 215 aa18.4■□□□□ 0.54
SHKBP1-212ENST00000596163 MED10Q9BTT4 135 aa18.4■□□□□ 0.54
SHKBP1-212ENST00000596163 NT5C1AQ9BXI3 368 aa18.4■□□□□ 0.54
SHKBP1-212ENST00000596163 LRRC3Q9BY71 257 aa18.4■□□□□ 0.54
SHKBP1-212ENST00000596163 ATXN3LQ9H3M9 355 aa18.4■□□□□ 0.54
SHKBP1-212ENST00000596163 DPEP3Q9H4B8 488 aa18.4■□□□□ 0.54
SHKBP1-212ENST00000596163 THAP9Q9H5L6 903 aa18.4■□□□□ 0.54
SHKBP1-212ENST00000596163 ZMYM5Q9UJ78 669 aa18.4■□□□□ 0.54
SHKBP1-212ENST00000596163 CEBPBP17676 345 aa18.39■□□□□ 0.53
SHKBP1-212ENST00000596163 TBXAS1P24557 533 aaPredicted RBP18.39■□□□□ 0.53
SHKBP1-212ENST00000596163 GABRR2P28476 465 aa18.39■□□□□ 0.53
SHKBP1-212ENST00000596163 ACOT1Q86TX2 421 aa18.39■□□□□ 0.53
SHKBP1-212ENST00000596163 TMC8Q8IU68 726 aa18.39■□□□□ 0.53
SHKBP1-212ENST00000596163 SPATA17Q96L03 361 aa18.39■□□□□ 0.53
SHKBP1-212ENST00000596163 CNOT6LQ96LI5 555 aaKnown RBP18.39■□□□□ 0.53
SHKBP1-212ENST00000596163 C8orf48Q96LL4 319 aa18.39■□□□□ 0.53
SHKBP1-212ENST00000596163 ANO10Q9NW15 660 aa18.39■□□□□ 0.53
SHKBP1-212ENST00000596163 NME7Q9Y5B8 376 aa18.39■□□□□ 0.53
SHKBP1-212ENST00000596163 BDP1A6H8Y1 2624 aa18.39■□□□□ 0.53
SHKBP1-212ENST00000596163 A0A1W2PRU2 124 aa18.38■□□□□ 0.53
SHKBP1-212ENST00000596163 SLC38A8A6NNN8 435 aa18.38■□□□□ 0.53
SHKBP1-212ENST00000596163 CILPO75339 1184 aa18.38■□□□□ 0.53
SHKBP1-212ENST00000596163 PRKCSHP14314 528 aaPredicted RBP18.38■□□□□ 0.53
SHKBP1-212ENST00000596163 CD58P19256 250 aa18.38■□□□□ 0.53
SHKBP1-212ENST00000596163 CCR2P41597 374 aa18.38■□□□□ 0.53
SHKBP1-212ENST00000596163 HTR4Q13639 388 aa18.38■□□□□ 0.53
SHKBP1-212ENST00000596163 SLC44A3Q8N4M1 653 aa18.38■□□□□ 0.53
SHKBP1-212ENST00000596163 SHKBP1Q8TBC3 707 aa18.38■□□□□ 0.53
SHKBP1-212ENST00000596163 GPR152Q8TDT2 470 aa18.38■□□□□ 0.53
SHKBP1-212ENST00000596163 NT5C1BQ96P26 610 aa18.38■□□□□ 0.53
SHKBP1-212ENST00000596163 B3GNT5Q9BYG0 378 aa18.38■□□□□ 0.53
SHKBP1-212ENST00000596163 SLITRK6Q9H5Y7 841 aa18.38■□□□□ 0.53
SHKBP1-212ENST00000596163 MAGED2Q9UNF1 606 aaPredicted RBP18.38■□□□□ 0.53
SHKBP1-212ENST00000596163 C2orf16Q68DN1 1984 aa18.38■□□□□ 0.53
SHKBP1-212ENST00000596163 SOBPA7XYQ1 873 aa18.37■□□□□ 0.53
SHKBP1-212ENST00000596163 LRRN2O75325 713 aa18.37■□□□□ 0.53
SHKBP1-212ENST00000596163 MOSPD3O75425 235 aa18.37■□□□□ 0.53
SHKBP1-212ENST00000596163 NOL4O94818 638 aa18.37■□□□□ 0.53
SHKBP1-212ENST00000596163 MTIF2P46199 727 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-212ENST00000596163 GPR15P49685 360 aa18.37■□□□□ 0.53
SHKBP1-212ENST00000596163 SIGLEC14Q08ET2 396 aa18.37■□□□□ 0.53
SHKBP1-212ENST00000596163 CUL2Q13617 745 aa18.37■□□□□ 0.53
SHKBP1-212ENST00000596163 TEAD2Q15562 447 aa18.37■□□□□ 0.53
SHKBP1-212ENST00000596163 CCDC142Q17RM4 750 aa18.37■□□□□ 0.53
SHKBP1-212ENST00000596163 TMEM31Q5JXX7 168 aa18.37■□□□□ 0.53
SHKBP1-212ENST00000596163 TRIM67Q6ZTA4 783 aa18.37■□□□□ 0.53
SHKBP1-212ENST00000596163 EHBP1Q8NDI1 1231 aa18.37■□□□□ 0.53
SHKBP1-212ENST00000596163 TATDN2Q93075 761 aa18.37■□□□□ 0.53
SHKBP1-212ENST00000596163 E2F7Q96AV8 911 aa18.37■□□□□ 0.53
SHKBP1-212ENST00000596163 TRMT2BQ96GJ1 504 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-212ENST00000596163 MYRFLQ96LU7 910 aa18.37■□□□□ 0.53
SHKBP1-212ENST00000596163 MED15Q96RN5 788 aa18.37■□□□□ 0.53
SHKBP1-212ENST00000596163 ZNF334Q9HCZ1 680 aaPredicted RBP18.37■□□□□ 0.53
SHKBP1-212ENST00000596163 NUMBLQ9Y6R0 609 aa18.37■□□□□ 0.53
SHKBP1-212ENST00000596163 DENND4AQ7Z401 1863 aa18.37■□□□□ 0.53
SHKBP1-212ENST00000596163 GPR37L1O60883 481 aa18.36■□□□□ 0.53
SHKBP1-212ENST00000596163 ECI2O75521 394 aa18.36■□□□□ 0.53
SHKBP1-212ENST00000596163 HMGA1P17096 107 aaKnown RBP18.36■□□□□ 0.53
SHKBP1-212ENST00000596163 GJA1P17302 382 aa18.36■□□□□ 0.53
SHKBP1-212ENST00000596163 DDX6P26196 483 aaKnown RBP eCLIP18.36■□□□□ 0.53
SHKBP1-212ENST00000596163 LRMPQ12912 555 aa18.36■□□□□ 0.53
SHKBP1-212ENST00000596163 STX1AQ16623 288 aa18.36■□□□□ 0.53
SHKBP1-212ENST00000596163 SDHAF4Q5VUM1 108 aa18.36■□□□□ 0.53
SHKBP1-212ENST00000596163 PARM1Q6UWI2 310 aa18.36■□□□□ 0.53
SHKBP1-212ENST00000596163 DENND5BQ6ZUT9 1274 aa18.36■□□□□ 0.53
SHKBP1-212ENST00000596163 GAREM2Q75VX8 874 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms