RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 FAM35AQ86V20 835 aa23.06■■□□□ 1.28
SNX1-206ENST00000559389 RBBP8NLQ8NC74 664 aaPredicted RBP23.06■■□□□ 1.28
SNX1-206ENST00000559389 NAA15Q9BXJ9 866 aaKnown RBP23.06■■□□□ 1.28
SNX1-206ENST00000559389 B3GNT5Q9BYG0 378 aa23.06■■□□□ 1.28
SNX1-206ENST00000559389 RHOBTB2Q9BYZ6 727 aa23.06■■□□□ 1.28
SNX1-206ENST00000559389 FAM49BQ9NUQ9 324 aa23.06■■□□□ 1.28
SNX1-206ENST00000559389 IFNKQ9P0W0 207 aa23.06■■□□□ 1.28
SNX1-206ENST00000559389 H3BQ06 376 aaPredicted RBP23.05■■□□□ 1.28
SNX1-206ENST00000559389 POU2F2P09086 479 aa23.05■■□□□ 1.28
SNX1-206ENST00000559389 CCDC130P13994 396 aa23.05■■□□□ 1.28
SNX1-206ENST00000559389 MAGEA11P43364 429 aa23.05■■□□□ 1.28
SNX1-206ENST00000559389 ARHGAP44Q17R89 818 aa23.05■■□□□ 1.28
SNX1-206ENST00000559389 MGAT5BQ3V5L5 792 aa23.05■■□□□ 1.28
SNX1-206ENST00000559389 FUKQ8N0W3 1084 aa23.05■■□□□ 1.28
SNX1-206ENST00000559389 C12orf76Q8N812 135 aaPredicted RBP23.05■■□□□ 1.28
SNX1-206ENST00000559389 C12orf29Q8N999 325 aa23.05■■□□□ 1.28
SNX1-206ENST00000559389 SMRP1Q8NCR6 262 aa23.05■■□□□ 1.28
SNX1-206ENST00000559389 PCMTD1Q96MG8 357 aaPredicted RBP23.05■■□□□ 1.28
SNX1-206ENST00000559389 SEPT5Q99719 369 aaPredicted RBP23.05■■□□□ 1.28
SNX1-206ENST00000559389 ZNF518BQ9C0D4 1074 aa23.05■■□□□ 1.28
SNX1-206ENST00000559389 PRDM6Q9NQX0 595 aa23.05■■□□□ 1.28
SNX1-206ENST00000559389 CD207Q9UJ71 328 aa23.05■■□□□ 1.28
SNX1-206ENST00000559389 SLC27A5Q9Y2P5 690 aa23.05■■□□□ 1.28
SNX1-206ENST00000559389 ATP8B3O60423 1300 aa23.05■■□□□ 1.28
SNX1-206ENST00000559389 CLDN5O00501 218 aa23.04■■□□□ 1.28
SNX1-206ENST00000559389 PAEPP09466 180 aa23.04■■□□□ 1.28
SNX1-206ENST00000559389 CYP2F1P24903 491 aa23.04■■□□□ 1.28
SNX1-206ENST00000559389 TUFMP49411 452 aaKnown RBP23.04■■□□□ 1.28
SNX1-206ENST00000559389 RARS2Q5T160 578 aaKnown RBP23.04■■□□□ 1.28
SNX1-206ENST00000559389 NEK11Q8NG66 645 aa23.04■■□□□ 1.28
SNX1-206ENST00000559389 FEZF2Q8TBJ5 459 aa23.04■■□□□ 1.28
SNX1-206ENST00000559389 ZNF707Q96C28 371 aaPredicted RBP23.04■■□□□ 1.28
SNX1-206ENST00000559389 GPR88Q9GZN0 384 aa23.04■■□□□ 1.28
SNX1-206ENST00000559389 S1PR5Q9H228 398 aa23.04■■□□□ 1.28
SNX1-206ENST00000559389 RNF225M0QZC1 329 aaPredicted RBP23.03■■□□□ 1.28
SNX1-206ENST00000559389 SOAT2O75908 522 aa23.03■■□□□ 1.28
SNX1-206ENST00000559389 LRG1P02750 347 aa23.03■■□□□ 1.28
SNX1-206ENST00000559389 KRT5P13647 590 aa23.03■■□□□ 1.28
SNX1-206ENST00000559389 ATF6P18850 670 aa23.03■■□□□ 1.28
SNX1-206ENST00000559389 BDNFP23560 247 aa23.03■■□□□ 1.28
SNX1-206ENST00000559389 PBX1P40424 430 aa23.03■■□□□ 1.28
SNX1-206ENST00000559389 TWF1Q12792 350 aa23.03■■□□□ 1.28
SNX1-206ENST00000559389 PLD1Q13393 1074 aa23.03■■□□□ 1.28
SNX1-206ENST00000559389 RAPGEF1Q13905 1077 aa23.03■■□□□ 1.28
SNX1-206ENST00000559389 PTPN21Q16825 1174 aa23.03■■□□□ 1.28
SNX1-206ENST00000559389 ARHGAP17Q68EM7 881 aa23.03■■□□□ 1.28
SNX1-206ENST00000559389 VSTM1Q6UX27 236 aa23.03■■□□□ 1.28
SNX1-206ENST00000559389 TMC5Q6UXY8 1006 aa23.03■■□□□ 1.28
SNX1-206ENST00000559389 PAQR9Q6ZVX9 377 aa23.03■■□□□ 1.28
SNX1-206ENST00000559389 SLC2A14Q8TDB8 520 aa23.03■■□□□ 1.28
SNX1-206ENST00000559389 APOL5Q9BWW9 433 aa23.03■■□□□ 1.28
SNX1-206ENST00000559389 PRKD2Q9BZL6 878 aa23.03■■□□□ 1.28
SNX1-206ENST00000559389 XPO4Q9C0E2 1151 aaKnown RBP23.03■■□□□ 1.28
SNX1-206ENST00000559389 ADAM7Q9H2U9 754 aa23.03■■□□□ 1.28
SNX1-206ENST00000559389 THEGQ9P2T0 379 aa23.03■■□□□ 1.28
SNX1-206ENST00000559389 C2orf16Q68DN1 1984 aa23.03■■□□□ 1.28
SNX1-206ENST00000559389 PATJQ8NI35 1801 aa23.03■■□□□ 1.28
SNX1-206ENST00000559389 CCDC195A0A1B0GUA6 201 aa23.02■■□□□ 1.28
SNX1-206ENST00000559389 F8VZ95 297 aa23.02■■□□□ 1.28
SNX1-206ENST00000559389 POLR2FP61218 127 aaKnown RBP23.02■■□□□ 1.28
SNX1-206ENST00000559389 ITIH3Q06033 890 aa23.02■■□□□ 1.28
SNX1-206ENST00000559389 SMAD4Q13485 552 aaKnown RBP23.02■■□□□ 1.28
SNX1-206ENST00000559389 DRAP1Q14919 205 aaPredicted RBP23.02■■□□□ 1.28
SNX1-206ENST00000559389 CLUL1Q15846 466 aa23.02■■□□□ 1.28
SNX1-206ENST00000559389 LEXMQ3ZCV2 418 aa23.02■■□□□ 1.28
SNX1-206ENST00000559389 SARM1Q6SZW1 724 aa23.02■■□□□ 1.28
SNX1-206ENST00000559389 CYP26C1Q6V0L0 522 aa23.02■■□□□ 1.28
SNX1-206ENST00000559389 GPR149Q86SP6 731 aa23.02■■□□□ 1.28
SNX1-206ENST00000559389 CYFIP2Q96F07 1278 aa23.02■■□□□ 1.28
SNX1-206ENST00000559389 SMARCD1Q96GM5 515 aa23.02■■□□□ 1.28
SNX1-206ENST00000559389 HEXIM2Q96MH2 286 aaKnown RBP23.02■■□□□ 1.28
SNX1-206ENST00000559389 HNRNPABQ99729 332 aaKnown RBP23.02■■□□□ 1.28
SNX1-206ENST00000559389 MED10Q9BTT4 135 aa23.02■■□□□ 1.28
SNX1-206ENST00000559389 STK33Q9BYT3 514 aa23.02■■□□□ 1.28
SNX1-206ENST00000559389 KRT82Q9NSB4 513 aa23.02■■□□□ 1.28
SNX1-206ENST00000559389 TMEM30AQ9NV96 361 aa23.02■■□□□ 1.28
SNX1-206ENST00000559389 DENND4AQ7Z401 1863 aa23.02■■□□□ 1.28
SNX1-206ENST00000559389 CCL16O15467 120 aa23.01■■□□□ 1.27
SNX1-206ENST00000559389 CBFA2T2O43439 604 aa23.01■■□□□ 1.27
SNX1-206ENST00000559389 XYLBO75191 536 aa23.01■■□□□ 1.27
SNX1-206ENST00000559389 PNMA6AP0CW24 399 aaPredicted RBP23.01■■□□□ 1.27
SNX1-206ENST00000559389 VDRP11473 427 aa23.01■■□□□ 1.27
SNX1-206ENST00000559389 CD19P15391 556 aa23.01■■□□□ 1.27
SNX1-206ENST00000559389 ADORA2BP29275 332 aa23.01■■□□□ 1.27
SNX1-206ENST00000559389 ALDH1A3P47895 512 aa23.01■■□□□ 1.27
SNX1-206ENST00000559389 GPR15P49685 360 aa23.01■■□□□ 1.27
SNX1-206ENST00000559389 CACNA2D1P54289 1103 aa23.01■■□□□ 1.27
SNX1-206ENST00000559389 RPL10AP62906 217 aaKnown RBP23.01■■□□□ 1.27
SNX1-206ENST00000559389 SGO2Q562F6 1265 aa23.01■■□□□ 1.27
SNX1-206ENST00000559389 PPP1R26Q5T8A7 1209 aaPredicted RBP23.01■■□□□ 1.27
SNX1-206ENST00000559389 FAM71AQ8IYT1 594 aa23.01■■□□□ 1.27
SNX1-206ENST00000559389 SMG7Q92540 1137 aaKnown RBP23.01■■□□□ 1.27
SNX1-206ENST00000559389 CEP72Q9P209 647 aa23.01■■□□□ 1.27
SNX1-206ENST00000559389 O00370 1275 aa23■■□□□ 1.27
SNX1-206ENST00000559389 FOXN3O00409 490 aaPredicted RBP23■■□□□ 1.27
SNX1-206ENST00000559389 TPM3P06753 285 aa23■■□□□ 1.27
SNX1-206ENST00000559389 JAM2P57087 298 aa23■■□□□ 1.27
SNX1-206ENST00000559389 TFAP2BQ92481 460 aa23■■□□□ 1.27
SNX1-206ENST00000559389 DMAP1Q9NPF5 467 aaPredicted RBP23■■□□□ 1.27
SNX1-206ENST00000559389 NLRC4Q9NPP4 1024 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms