RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	HNRNPD	Q14103	355 aa	Known RBP	13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	TMEM132D	Q14C87	1099 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	NFE2	Q16621	373 aa	Predicted RBP	13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	EML3	Q32P44	896 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	UAP1L1	Q3KQV9	507 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	HSF5	Q4G112	596 aa	Predicted RBP	13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	TRIM61	Q5EBN2	209 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	PEAR1	Q5VY43	1037 aa	Predicted RBP	13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	TXNDC8	Q6A555	127 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	JADE1	Q6IE81	842 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	ANO7	Q6IWH7	933 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	LPCAT2	Q7L5N7	544 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	PROSER1	Q86XN7	944 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	SYT12	Q8IV01	421 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	OLIG1	Q8TAK6	271 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	USP33	Q8TEY7	942 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	C8orf76	Q96K31	380 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	ASB7	Q9H672	318 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	ABCB6	Q9NP58	842 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	C2CD2	Q9Y426	696 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	DSP	P15924	2871 aa	Known RBP	13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	TRAV19	A0A0A6YYK7	116 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	SFI1	A8K8P3	1242 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	CYB561D2	O14569	222 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	TADA3	O75528	432 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	NOL4	O94818	638 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	NFATC1	O95644	943 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	CKM	P06732	381 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	BCKDHB	P21953	392 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	U2AF2	P26368	475 aa	Known RBP eCLIP	13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	RPL10A	P62906	217 aa	Known RBP	13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	TSPY1	Q01534	308 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	SEMA3B	Q13214	749 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	BYSL	Q13895	437 aa	Known RBP	13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	CRY1	Q16526	586 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	SV2C	Q496J9	727 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	HYI	Q5T013	277 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	NAIF1	Q69YI7	327 aa	Predicted RBP	13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	KIAA1211L	Q6NV74	962 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	SLC23A3	Q6PIS1	610 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	RABEPK	Q7Z6M1	372 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	PIP4P1	Q86T03	277 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	TMEM130	Q8N3G9	435 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	KIAA1958	Q8N8K9	716 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	SYT2	Q8N9I0	419 aa	Predicted RBP	13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	FSIP1	Q8NA03	581 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	MDGA1	Q8NFP4	955 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	WHAMM	Q8TF30	809 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	PIGK	Q92643	395 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	MYRFL	Q96LU7	910 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	PYM1	Q9BRP8	204 aa	Known RBP	13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	CPSF3	Q9UKF6	684 aa	Known RBP	13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	KLK13	Q9UKR3	277 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	ODF2L	Q9ULJ1	636 aa		13.4	□□□□□ -0.26
CAPN1-223	ENST00000533079	LAMA5	O15230	3695 aa		13.4	□□□□□ -0.27
CAPN1-223	ENST00000533079	HELZ	P42694	1942 aa	Known RBP	13.39	□□□□□ -0.27
CAPN1-223	ENST00000533079	PLXND1	Q9Y4D7	1925 aa		13.39	□□□□□ -0.27
CAPN1-223	ENST00000533079		A0A0B4J269	797 aa		13.39	□□□□□ -0.27
CAPN1-223	ENST00000533079	NFIC	P08651	508 aa		13.39	□□□□□ -0.27
CAPN1-223	ENST00000533079	ENG	P17813	658 aa		13.39	□□□□□ -0.27
CAPN1-223	ENST00000533079	PFKL	P17858	780 aa		13.39	□□□□□ -0.27
CAPN1-223	ENST00000533079	P2RY2	P41231	377 aa		13.39	□□□□□ -0.27
CAPN1-223	ENST00000533079	SIM1	P81133	766 aa	Predicted RBP	13.39	□□□□□ -0.27
CAPN1-223	ENST00000533079	MRPS21	P82921	87 aa	Known RBP	13.39	□□□□□ -0.27
CAPN1-223	ENST00000533079	POU5F1	Q01860	360 aa	Known RBP	13.39	□□□□□ -0.27
CAPN1-223	ENST00000533079	GUCY1B3	Q02153	619 aa		13.39	□□□□□ -0.27
CAPN1-223	ENST00000533079	ZNF423	Q2M1K9	1284 aa		13.39	□□□□□ -0.27
CAPN1-223	ENST00000533079	KCNK18	Q7Z418	384 aa		13.39	□□□□□ -0.27
CAPN1-223	ENST00000533079	HSCB	Q8IWL3	235 aa		13.39	□□□□□ -0.27
CAPN1-223	ENST00000533079	HDDC3	Q8N4P3	179 aa		13.39	□□□□□ -0.27
CAPN1-223	ENST00000533079	CEP76	Q8TAP6	659 aa		13.39	□□□□□ -0.27
CAPN1-223	ENST00000533079	ZNF560	Q96MR9	790 aa		13.39	□□□□□ -0.27
CAPN1-223	ENST00000533079	MSTO1	Q9BUK6	570 aa		13.39	□□□□□ -0.27
CAPN1-223	ENST00000533079	MAGED2	Q9UNF1	606 aa	Predicted RBP	13.39	□□□□□ -0.27
CAPN1-223	ENST00000533079	WNT6	Q9Y6F9	365 aa		13.39	□□□□□ -0.27
CAPN1-223	ENST00000533079	MYH11	P35749	1972 aa		13.38	□□□□□ -0.27
CAPN1-223	ENST00000533079	EIF2D	P41214	584 aa	Known RBP	13.38	□□□□□ -0.27
CAPN1-223	ENST00000533079	PNPLA4	P41247	253 aa		13.38	□□□□□ -0.27
CAPN1-223	ENST00000533079	MAPK8	P45983	427 aa		13.38	□□□□□ -0.27
CAPN1-223	ENST00000533079	ATXN3	P54252	364 aa	Predicted RBP	13.38	□□□□□ -0.27
CAPN1-223	ENST00000533079	RAD51AP2	Q09MP3	1159 aa		13.38	□□□□□ -0.27
CAPN1-223	ENST00000533079	LYSMD4	Q5XG99	296 aa		13.38	□□□□□ -0.27
CAPN1-223	ENST00000533079	DTHD1	Q6ZMT9	781 aa		13.38	□□□□□ -0.27
CAPN1-223	ENST00000533079	LRRTM3	Q86VH5	581 aa		13.38	□□□□□ -0.27
CAPN1-223	ENST00000533079	NT5DC4	Q86YG4	428 aa		13.38	□□□□□ -0.27
CAPN1-223	ENST00000533079	EFCAB13	Q8IY85	973 aa		13.38	□□□□□ -0.27
CAPN1-223	ENST00000533079	FBXO18	Q8NFZ0	1043 aa		13.38	□□□□□ -0.27
CAPN1-223	ENST00000533079	POLM	Q9NP87	494 aa	Predicted RBP	13.38	□□□□□ -0.27
CAPN1-223	ENST00000533079	INVS	Q9Y283	1065 aa		13.38	□□□□□ -0.27
CAPN1-223	ENST00000533079	TCHH	Q07283	1943 aa		13.37	□□□□□ -0.27
CAPN1-223	ENST00000533079	SMG1	Q96Q15	3661 aa	Known RBP	13.37	□□□□□ -0.27
CAPN1-223	ENST00000533079	PP2D1	A8MPX8	630 aa		13.37	□□□□□ -0.27
CAPN1-223	ENST00000533079	KPNA7	A9QM74	516 aa		13.37	□□□□□ -0.27
CAPN1-223	ENST00000533079		K7EQS6	105 aa		13.37	□□□□□ -0.27
CAPN1-223	ENST00000533079	PRPF40A	O75400	957 aa	Known RBP	13.37	□□□□□ -0.27
CAPN1-223	ENST00000533079	SLC12A3	P55017	1021 aa		13.37	□□□□□ -0.27
CAPN1-223	ENST00000533079	KCNB1	Q14721	858 aa		13.37	□□□□□ -0.27
CAPN1-223	ENST00000533079	CFAP221	Q4G0U5	840 aa		13.37	□□□□□ -0.27
CAPN1-223	ENST00000533079	WSCD1	Q658N2	575 aa		13.37	□□□□□ -0.27
CAPN1-223	ENST00000533079	SPATA18	Q8TC71	538 aa		13.37	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms