RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 SPATA2LQ8IUW3 424 aaPredicted RBP15.94■□□□□ 0.14
NUP54-213ENST00000513352 HEXIM2Q96MH2 286 aaKnown RBP15.94■□□□□ 0.14
NUP54-213ENST00000513352 TWNKQ96RR1 684 aa15.94■□□□□ 0.14
NUP54-213ENST00000513352 CDCA3Q99618 268 aaPredicted RBP15.94■□□□□ 0.14
NUP54-213ENST00000513352 LPIN3Q9BQK8 851 aa15.94■□□□□ 0.14
NUP54-213ENST00000513352 FAM49BQ9NUQ9 324 aa15.94■□□□□ 0.14
NUP54-213ENST00000513352 GTF3C4Q9UKN8 822 aa15.94■□□□□ 0.14
NUP54-213ENST00000513352 MYBPHLA2RUH7 354 aa15.93■□□□□ 0.14
NUP54-213ENST00000513352 PRRG1O14668 218 aa15.93■□□□□ 0.14
NUP54-213ENST00000513352 AP5Z1O43299 807 aa15.93■□□□□ 0.14
NUP54-213ENST00000513352 TGM5O43548 720 aa15.93■□□□□ 0.14
NUP54-213ENST00000513352 NOL4O94818 638 aa15.93■□□□□ 0.14
NUP54-213ENST00000513352 PNMA6AP0CW24 399 aaPredicted RBP15.93■□□□□ 0.14
NUP54-213ENST00000513352 CD19P15391 556 aa15.93■□□□□ 0.14
NUP54-213ENST00000513352 EPCAMP16422 314 aa15.93■□□□□ 0.14
NUP54-213ENST00000513352 POU3F3P20264 500 aaPredicted RBP15.93■□□□□ 0.14
NUP54-213ENST00000513352 CLCN4P51793 760 aa15.93■□□□□ 0.14
NUP54-213ENST00000513352 ADCY1Q08828 1119 aa15.93■□□□□ 0.14
NUP54-213ENST00000513352 GPR17Q13304 367 aa15.93■□□□□ 0.14
NUP54-213ENST00000513352 MAPRE1Q15691 268 aaKnown RBP15.93■□□□□ 0.14
NUP54-213ENST00000513352 LIN9Q5TKA1 542 aa15.93■□□□□ 0.14
NUP54-213ENST00000513352 ELMSAN1Q6PJG2 1045 aa15.93■□□□□ 0.14
NUP54-213ENST00000513352 LRRTM3Q86VH5 581 aa15.93■□□□□ 0.14
NUP54-213ENST00000513352 GPIHBP1Q8IV16 184 aa15.93■□□□□ 0.14
NUP54-213ENST00000513352 UBR7Q8N806 425 aa15.93■□□□□ 0.14
NUP54-213ENST00000513352 WHAMMQ8TF30 809 aa15.93■□□□□ 0.14
NUP54-213ENST00000513352 MYLPFQ96A32 169 aa15.93■□□□□ 0.14
NUP54-213ENST00000513352 TMEM176AQ96HP8 235 aa15.93■□□□□ 0.14
NUP54-213ENST00000513352 FAM124BQ9H5Z6 455 aaPredicted RBP15.93■□□□□ 0.14
NUP54-213ENST00000513352 CRTAC1Q9NQ79 661 aa15.93■□□□□ 0.14
NUP54-213ENST00000513352 TMLHEQ9NVH6 421 aa15.93■□□□□ 0.14
NUP54-213ENST00000513352 PCDHB5Q9Y5E4 795 aa15.93■□□□□ 0.14
NUP54-213ENST00000513352 ATP8B3O60423 1300 aa15.93■□□□□ 0.14
NUP54-213ENST00000513352 MTCL1Q9Y4B5 1905 aaKnown RBP15.92■□□□□ 0.14
NUP54-213ENST00000513352 FSD2A1L4K1 749 aa15.92■□□□□ 0.14
NUP54-213ENST00000513352 MTMR11A4FU01 709 aa15.92■□□□□ 0.14
NUP54-213ENST00000513352 GOLGA6L3A6NEY3 463 aa15.92■□□□□ 0.14
NUP54-213ENST00000513352 SRGAP2BP0DMP2 458 aa15.92■□□□□ 0.14
NUP54-213ENST00000513352 CCDC130P13994 396 aa15.92■□□□□ 0.14
NUP54-213ENST00000513352 ACO1P21399 889 aaKnown RBP15.92■□□□□ 0.14
NUP54-213ENST00000513352 RAD23BP54727 409 aa15.92■□□□□ 0.14
NUP54-213ENST00000513352 RBM10P98175 930 aaKnown RBP15.92■□□□□ 0.14
NUP54-213ENST00000513352 NFE2Q16621 373 aaPredicted RBP15.92■□□□□ 0.14
NUP54-213ENST00000513352 TPGS2Q68CL5 300 aa15.92■□□□□ 0.14
NUP54-213ENST00000513352 DPY19L2P1Q6NXN4 242 aa15.92■□□□□ 0.14
NUP54-213ENST00000513352 C4orf50Q6ZRC1 276 aa15.92■□□□□ 0.14
NUP54-213ENST00000513352 SLC4A11Q8NBS3 891 aa15.92■□□□□ 0.14
NUP54-213ENST00000513352 ATAD1Q8NBU5 361 aa15.92■□□□□ 0.14
NUP54-213ENST00000513352 KREMEN2Q8NCW0 462 aa15.92■□□□□ 0.14
NUP54-213ENST00000513352 ZNF461Q8TAF7 563 aa15.92■□□□□ 0.14
NUP54-213ENST00000513352 MYCBPAPQ8TBZ2 947 aa15.92■□□□□ 0.14
NUP54-213ENST00000513352 SHC3Q92529 594 aa15.92■□□□□ 0.14
NUP54-213ENST00000513352 JAKMIP2Q96AA8 810 aa15.92■□□□□ 0.14
NUP54-213ENST00000513352 SEPT5Q99719 369 aaPredicted RBP15.92■□□□□ 0.14
NUP54-213ENST00000513352 CYP4F11Q9HBI6 524 aa15.92■□□□□ 0.14
NUP54-213ENST00000513352 MAN1C1Q9NR34 630 aa15.92■□□□□ 0.14
NUP54-213ENST00000513352 CEP72Q9P209 647 aa15.92■□□□□ 0.14
NUP54-213ENST00000513352 AFF4Q9UHB7 1163 aaKnown RBP15.92■□□□□ 0.14
NUP54-213ENST00000513352 DAAM1Q9Y4D1 1078 aa15.92■□□□□ 0.14
NUP54-213ENST00000513352 HCFC2Q9Y5Z7 792 aa15.92■□□□□ 0.14
NUP54-213ENST00000513352 F8VZ95 297 aa15.91■□□□□ 0.14
NUP54-213ENST00000513352 CLDN5O00501 218 aa15.91■□□□□ 0.14
NUP54-213ENST00000513352 LINC01565O15544 149 aa15.91■□□□□ 0.14
NUP54-213ENST00000513352 CALCAP01258 141 aa15.91■□□□□ 0.14
NUP54-213ENST00000513352 ADORA2BP29275 332 aa15.91■□□□□ 0.14
NUP54-213ENST00000513352 ZNF75DP51815 510 aa15.91■□□□□ 0.14
NUP54-213ENST00000513352 SMARCB1Q12824 385 aa15.91■□□□□ 0.14
NUP54-213ENST00000513352 MGAT5BQ3V5L5 792 aa15.91■□□□□ 0.14
NUP54-213ENST00000513352 C12orf29Q8N999 325 aa15.91■□□□□ 0.14
NUP54-213ENST00000513352 SPPL2BQ8TCT7 592 aa15.91■□□□□ 0.14
NUP54-213ENST00000513352 SLC22A17Q8WUG5 538 aa15.91■□□□□ 0.14
NUP54-213ENST00000513352 CPLX3Q8WVH0 158 aa15.91■□□□□ 0.14
NUP54-213ENST00000513352 CASP10Q92851 521 aa15.91■□□□□ 0.14
NUP54-213ENST00000513352 PCED1BQ96HM7 432 aa15.91■□□□□ 0.14
NUP54-213ENST00000513352 PKMYT1Q99640 499 aa15.91■□□□□ 0.14
NUP54-213ENST00000513352 NAA15Q9BXJ9 866 aaKnown RBP15.91■□□□□ 0.14
NUP54-213ENST00000513352 STK33Q9BYT3 514 aa15.91■□□□□ 0.14
NUP54-213ENST00000513352 RHOBTB2Q9BYZ6 727 aa15.91■□□□□ 0.14
NUP54-213ENST00000513352 CLDND1Q9NY35 253 aa15.91■□□□□ 0.14
NUP54-213ENST00000513352 FBXW11Q9UKB1 542 aa15.91■□□□□ 0.14
NUP54-213ENST00000513352 SLC27A5Q9Y2P5 690 aa15.91■□□□□ 0.14
NUP54-213ENST00000513352 RNF225M0QZC1 329 aaPredicted RBP15.9■□□□□ 0.14
NUP54-213ENST00000513352 FOXN3O00409 490 aaPredicted RBP15.9■□□□□ 0.14
NUP54-213ENST00000513352 CYP26A1O43174 497 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 THAP12O43422 761 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 SOAT2O75908 522 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 GFPT2O94808 682 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 ABLIM3O94929 683 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 PAEPP09466 180 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 ATF2P15336 505 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 BDNFP23560 247 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 BRD2P25440 801 aaKnown RBP15.9■□□□□ 0.14
NUP54-213ENST00000513352 PBX1P40424 430 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 STAT1P42224 750 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 DUSP4Q13115 394 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 SGO2Q562F6 1265 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 SPECC1LQ69YQ0 1117 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 FAM171BQ6P995 826 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 CCDC149Q6ZUS6 474 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 TMC6Q7Z403 805 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms