RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 TNIP3Q96KP6 325 aa28.44■■■□□ 2.14
MSX1-201ENST00000382723 NUP85Q9BW27 656 aa28.44■■■□□ 2.14
MSX1-201ENST00000382723 DNAI2Q9GZS0 605 aa28.44■■■□□ 2.14
MSX1-201ENST00000382723 GOLPH3Q9H4A6 298 aa28.44■■■□□ 2.14
MSX1-201ENST00000382723 NRDE2Q9H7Z3 1164 aa28.44■■■□□ 2.14
MSX1-201ENST00000382723 CYTH4Q9UIA0 394 aa28.44■■■□□ 2.14
MSX1-201ENST00000382723 ATP2C2O75185 946 aa28.43■■■□□ 2.14
MSX1-201ENST00000382723 ATP1A1P05023 1023 aaKnown RBP28.43■■■□□ 2.14
MSX1-201ENST00000382723 FAM163BP0C2L3 166 aa28.43■■■□□ 2.14
MSX1-201ENST00000382723 CCDC130P13994 396 aa28.43■■■□□ 2.14
MSX1-201ENST00000382723 PPP1R2P3Q6NXS1 205 aa28.43■■■□□ 2.14
MSX1-201ENST00000382723 FTCDO95954 541 aa28.43■■■□□ 2.14
MSX1-201ENST00000382723 MYBL1P10243 752 aa28.43■■■□□ 2.14
MSX1-201ENST00000382723 MMP8P22894 467 aa28.43■■■□□ 2.14
MSX1-201ENST00000382723 C1QBPQ07021 282 aaKnown RBP28.43■■■□□ 2.14
MSX1-201ENST00000382723 PTP4A2Q12974 167 aa28.43■■■□□ 2.14
MSX1-201ENST00000382723 STILQ15468 1287 aa28.43■■■□□ 2.14
MSX1-201ENST00000382723 LIN9Q5TKA1 542 aa28.43■■■□□ 2.14
MSX1-201ENST00000382723 ERICH1Q86X53 443 aa28.43■■■□□ 2.14
MSX1-201ENST00000382723 B3GALNT2Q8NCR0 500 aa28.43■■■□□ 2.14
MSX1-201ENST00000382723 ABHD14A-ACY1A0A1B0GW23 586 aa28.42■■■□□ 2.14
MSX1-201ENST00000382723 LHX1P48742 406 aa28.42■■■□□ 2.14
MSX1-201ENST00000382723 JRKLQ9Y4A0 524 aa28.42■■■□□ 2.14
MSX1-201ENST00000382723 TTC3P53804 2025 aa28.42■■■□□ 2.14
MSX1-201ENST00000382723 M0QZQ0 153 aa28.41■■■□□ 2.14
MSX1-201ENST00000382723 PAX3P23760 479 aa28.41■■■□□ 2.14
MSX1-201ENST00000382723 ADORA2BP29275 332 aa28.41■■■□□ 2.14
MSX1-201ENST00000382723 CDR1P51861 262 aa28.41■■■□□ 2.14
MSX1-201ENST00000382723 PTPROQ16827 1216 aa28.41■■■□□ 2.14
MSX1-201ENST00000382723 CCDC142Q17RM4 750 aa28.41■■■□□ 2.14
MSX1-201ENST00000382723 METTL23Q86XA0 190 aa28.41■■■□□ 2.14
MSX1-201ENST00000382723 VCPIP1Q96JH7 1222 aa28.41■■■□□ 2.14
MSX1-201ENST00000382723 SUSD3Q96L08 255 aa28.41■■■□□ 2.14
MSX1-201ENST00000382723 MRPL9Q9BYD2 267 aaKnown RBP28.41■■■□□ 2.14
MSX1-201ENST00000382723 NCK2O43639 380 aa28.41■■■□□ 2.14
MSX1-201ENST00000382723 GPD2P43304 727 aa28.41■■■□□ 2.14
MSX1-201ENST00000382723 DAAM2Q86T65 1068 aa28.41■■■□□ 2.14
MSX1-201ENST00000382723 ZNF564Q8TBZ8 553 aaPredicted RBP28.41■■■□□ 2.14
MSX1-201ENST00000382723 HESX1Q9UBX0 185 aa28.41■■■□□ 2.14
MSX1-201ENST00000382723 PRKAG2Q9UGJ0 569 aa28.41■■■□□ 2.14
MSX1-201ENST00000382723 NRP1O14786 923 aa28.4■■■□□ 2.14
MSX1-201ENST00000382723 BUB1BO60566 1050 aaPredicted RBP28.4■■■□□ 2.14
MSX1-201ENST00000382723 TADA2AO75478 443 aa28.4■■■□□ 2.14
MSX1-201ENST00000382723 PTPN1P18031 435 aaKnown RBP28.4■■■□□ 2.14
MSX1-201ENST00000382723 CYP4A22Q5TCH4 519 aa28.4■■■□□ 2.14
MSX1-201ENST00000382723 KIAA0319Q5VV43 1072 aa28.4■■■□□ 2.14
MSX1-201ENST00000382723 ARHGAP17Q68EM7 881 aa28.4■■■□□ 2.14
MSX1-201ENST00000382723 TMCO2Q7Z6W1 182 aaPredicted RBP28.4■■■□□ 2.14
MSX1-201ENST00000382723 TTC30AQ86WT1 665 aa28.4■■■□□ 2.14
MSX1-201ENST00000382723 LRRC57Q8N9N7 239 aa28.4■■■□□ 2.14
MSX1-201ENST00000382723 SLC2A14Q8TDB8 520 aa28.4■■■□□ 2.14
MSX1-201ENST00000382723 AVENQ9NQS1 362 aaPredicted RBP28.4■■■□□ 2.14
MSX1-201ENST00000382723 CALB1P05937 261 aa28.39■■■□□ 2.14
MSX1-201ENST00000382723 TCEAL1Q15170 157 aa28.39■■■□□ 2.14
MSX1-201ENST00000382723 PTPN20Q4JDL3 420 aa28.39■■■□□ 2.14
MSX1-201ENST00000382723 FAM117BQ6P1L5 589 aa28.39■■■□□ 2.14
MSX1-201ENST00000382723 UVRAGQ9P2Y5 699 aa28.39■■■□□ 2.14
MSX1-201ENST00000382723 DSEQ9UL01 958 aa28.39■■■□□ 2.14
MSX1-201ENST00000382723 TMEM189-UBE2V1I3L0A0 370 aa28.39■■■□□ 2.13
MSX1-201ENST00000382723 AMHP03971 560 aa28.39■■■□□ 2.13
MSX1-201ENST00000382723 ALDH2P05091 517 aa28.39■■■□□ 2.13
MSX1-201ENST00000382723 CYP11A1P05108 521 aa28.39■■■□□ 2.13
MSX1-201ENST00000382723 PFKMP08237 780 aa28.39■■■□□ 2.13
MSX1-201ENST00000382723 DEFB103AP81534 67 aa28.39■■■□□ 2.13
MSX1-201ENST00000382723 MDH1BQ5I0G3 518 aa28.39■■■□□ 2.13
MSX1-201ENST00000382723 BTBD6Q96KE9 485 aa28.39■■■□□ 2.13
MSX1-201ENST00000382723 CPXM1Q96SM3 734 aa28.39■■■□□ 2.13
MSX1-201ENST00000382723 SYT15Q9BQS2 421 aa28.39■■■□□ 2.13
MSX1-201ENST00000382723 SYNCQ9H7C4 482 aa28.39■■■□□ 2.13
MSX1-201ENST00000382723 TJP2Q9UDY2 1190 aa28.39■■■□□ 2.13
MSX1-201ENST00000382723 MICAL3Q7RTP6 2002 aa28.38■■■□□ 2.13
MSX1-201ENST00000382723 TMEM110-MUSTN1A8MSY1 372 aa28.38■■■□□ 2.13
MSX1-201ENST00000382723 PBX3P40426 434 aa28.38■■■□□ 2.13
MSX1-201ENST00000382723 SLC11A1P49279 550 aa28.38■■■□□ 2.13
MSX1-201ENST00000382723 BCAR1P56945 870 aa28.38■■■□□ 2.13
MSX1-201ENST00000382723 PDCLQ13371 301 aa28.38■■■□□ 2.13
MSX1-201ENST00000382723 LRRC43Q8N309 656 aa28.38■■■□□ 2.13
MSX1-201ENST00000382723 ST7Q9NRC1 585 aa28.38■■■□□ 2.13
MSX1-201ENST00000382723 PACSIN2Q9UNF0 486 aaPredicted RBP28.38■■■□□ 2.13
MSX1-201ENST00000382723 DGKIO75912 1065 aa28.37■■■□□ 2.13
MSX1-201ENST00000382723 HADHBP55084 474 aaKnown RBP28.37■■■□□ 2.13
MSX1-201ENST00000382723 OVOS1Q6IE37 1185 aa28.37■■■□□ 2.13
MSX1-201ENST00000382723 OTOP2Q7RTS6 562 aa28.37■■■□□ 2.13
MSX1-201ENST00000382723 TOP1MTQ969P6 601 aa28.37■■■□□ 2.13
MSX1-201ENST00000382723 IL23AQ9NPF7 189 aa28.37■■■□□ 2.13
MSX1-201ENST00000382723 CRTAC1Q9NQ79 661 aa28.37■■■□□ 2.13
MSX1-201ENST00000382723 PCDHB8Q9UN66 801 aa28.37■■■□□ 2.13
MSX1-201ENST00000382723 FAN1Q9Y2M0 1017 aa28.37■■■□□ 2.13
MSX1-201ENST00000382723 HYOU1Q9Y4L1 999 aa28.37■■■□□ 2.13
MSX1-201ENST00000382723 NT5C1B-RDH14C9J2C7 533 aa28.37■■■□□ 2.13
MSX1-201ENST00000382723 MTA2O94776 668 aa28.37■■■□□ 2.13
MSX1-201ENST00000382723 GJB6O95452 261 aa28.37■■■□□ 2.13
MSX1-201ENST00000382723 TKTP29401 623 aaKnown RBP28.37■■■□□ 2.13
MSX1-201ENST00000382723 DNA2P51530 1060 aa28.37■■■□□ 2.13
MSX1-201ENST00000382723 WDR5P61964 334 aaKnown RBP28.37■■■□□ 2.13
MSX1-201ENST00000382723 MAMLD1Q13495 774 aa28.37■■■□□ 2.13
MSX1-201ENST00000382723 PKDCCQ504Y2 493 aa28.37■■■□□ 2.13
MSX1-201ENST00000382723 SYCE1Q8N0S2 351 aa28.37■■■□□ 2.13
MSX1-201ENST00000382723 RTP3Q9BQQ7 232 aa28.37■■■□□ 2.13
MSX1-201ENST00000382723 COLEC11Q9BWP8 271 aa28.37■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms