RNA–Protein interactions for RNA: ENST00000371820.3

COL5A1-202, Transcript of collagen type V alpha 1 chain, humanhuman

TSL 2

Gene COL5A1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-202ENST00000371820 SMYD4Q8IYR2 804 aaPredicted RBP11.12□□□□□ -0.63
COL5A1-202ENST00000371820 GOLGA5Q8TBA6 731 aa11.12□□□□□ -0.63
COL5A1-202ENST00000371820 LNX1Q8TBB1 728 aaPredicted RBP11.12□□□□□ -0.63
COL5A1-202ENST00000371820 LRRC15Q8TF66 581 aa11.12□□□□□ -0.63
COL5A1-202ENST00000371820 SMG7Q92540 1137 aaKnown RBP11.12□□□□□ -0.63
COL5A1-202ENST00000371820 DDX12PQ92771 950 aa11.12□□□□□ -0.63
COL5A1-202ENST00000371820 ATOH1Q92858 354 aaPredicted RBP11.12□□□□□ -0.63
COL5A1-202ENST00000371820 B3GALT6Q96L58 329 aa11.12□□□□□ -0.63
COL5A1-202ENST00000371820 CEP63Q96MT8 703 aa11.12□□□□□ -0.63
COL5A1-202ENST00000371820 MSTO1Q9BUK6 570 aa11.12□□□□□ -0.63
COL5A1-202ENST00000371820 NHEJ1Q9H9Q4 299 aaPredicted RBP11.12□□□□□ -0.63
COL5A1-202ENST00000371820 MTRRQ9UBK8 725 aa11.12□□□□□ -0.63
COL5A1-202ENST00000371820 UBQLN1Q9UMX0 589 aaKnown RBP11.12□□□□□ -0.63
COL5A1-202ENST00000371820 GUCA1BQ9UMX6 200 aa11.12□□□□□ -0.63
COL5A1-202ENST00000371820 BACE2Q9Y5Z0 518 aa11.12□□□□□ -0.63
COL5A1-202ENST00000371820 ARHGEF37A1IGU5 675 aa11.11□□□□□ -0.63
COL5A1-202ENST00000371820 H0Y858 1186 aa11.11□□□□□ -0.63
COL5A1-202ENST00000371820 H7C4K7 107 aa11.11□□□□□ -0.63
COL5A1-202ENST00000371820 GFRA3O60609 400 aa11.11□□□□□ -0.63
COL5A1-202ENST00000371820 PAPLNO95428 1278 aa11.11□□□□□ -0.63
COL5A1-202ENST00000371820 HNRNPA1P09651 372 aaKnown RBP eCLIP11.11□□□□□ -0.63
COL5A1-202ENST00000371820 CXCL8P10145 99 aa11.11□□□□□ -0.63
COL5A1-202ENST00000371820 CYP3A5P20815 502 aa11.11□□□□□ -0.63
COL5A1-202ENST00000371820 HOXA9P31269 272 aa11.11□□□□□ -0.63
COL5A1-202ENST00000371820 AMPD2Q01433 879 aa11.11□□□□□ -0.63
COL5A1-202ENST00000371820 POU5F1Q01860 360 aaKnown RBP11.11□□□□□ -0.63
COL5A1-202ENST00000371820 RAB33AQ14088 237 aa11.11□□□□□ -0.63
COL5A1-202ENST00000371820 IFI16Q16666 785 aaKnown RBP11.11□□□□□ -0.63
COL5A1-202ENST00000371820 ASTLQ6HA08 431 aaPredicted RBP11.11□□□□□ -0.63
COL5A1-202ENST00000371820 LILRA6Q6PI73 481 aa11.11□□□□□ -0.63
COL5A1-202ENST00000371820 SFR1Q86XK3 245 aa11.11□□□□□ -0.63
COL5A1-202ENST00000371820 CCDC65Q8IXS2 484 aa11.11□□□□□ -0.63
COL5A1-202ENST00000371820 APPL2Q8NEU8 664 aa11.11□□□□□ -0.63
COL5A1-202ENST00000371820 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.11□□□□□ -0.635e-12■■■■■ 104.3
COL5A1-202ENST00000371820 SECISBP2LQ93073 1101 aaKnown RBP11.11□□□□□ -0.63
COL5A1-202ENST00000371820 CNOT6LQ96LI5 555 aaKnown RBP11.11□□□□□ -0.63
COL5A1-202ENST00000371820 ZMAT2Q96NC0 199 aaKnown RBP11.11□□□□□ -0.63
COL5A1-202ENST00000371820 DUSP9Q99956 384 aaKnown RBP11.11□□□□□ -0.63
COL5A1-202ENST00000371820 FAM107BQ9H098 131 aa11.11□□□□□ -0.63
COL5A1-202ENST00000371820 CXCL16Q9H2A7 254 aa11.11□□□□□ -0.63
COL5A1-202ENST00000371820 ANKZF1Q9H8Y5 726 aa11.11□□□□□ -0.63
COL5A1-202ENST00000371820 GOLGA2P5Q9HBQ8 144 aa11.11□□□□□ -0.63
COL5A1-202ENST00000371820 OLFML3Q9NRN5 406 aa11.11□□□□□ -0.63
COL5A1-202ENST00000371820 FBXW11Q9UKB1 542 aa11.11□□□□□ -0.63
COL5A1-202ENST00000371820 ADAM21Q9UKJ8 722 aa11.11□□□□□ -0.63
COL5A1-202ENST00000371820 PCDHB13Q9Y5F0 798 aa11.11□□□□□ -0.63
COL5A1-202ENST00000371820 CLUHO75153 1309 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 PDCD11Q14690 1871 aaKnown RBP11.1□□□□□ -0.63
COL5A1-202ENST00000371820 ZFHX2Q9C0A1 2572 aaPredicted RBP11.1□□□□□ -0.63
COL5A1-202ENST00000371820 MTCL1Q9Y4B5 1905 aaKnown RBP11.1□□□□□ -0.63
COL5A1-202ENST00000371820 A0A0B4J269 797 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 MYMKA6NI61 221 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 PROB1E7EW31 1015 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 PJA2O43164 708 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 XYLBO75191 536 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 ZMYND10O75800 440 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 GCNT3O95395 438 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 IDEP14735 1019 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 RPL17P18621 184 aaKnown RBP11.1□□□□□ -0.63
COL5A1-202ENST00000371820 ANXA13P27216 316 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 TKTP29401 623 aaKnown RBP11.1□□□□□ -0.63
COL5A1-202ENST00000371820 CASP1P29466 404 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 NMT1P30419 496 aaKnown RBP11.1□□□□□ -0.63
COL5A1-202ENST00000371820 LRPAP1P30533 357 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 BRCC3P46736 316 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 CLCN5P51795 746 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 FKBP3Q00688 224 aaKnown RBP11.1□□□□□ -0.63
COL5A1-202ENST00000371820 SOX4Q06945 474 aaPredicted RBP11.1□□□□□ -0.63
COL5A1-202ENST00000371820 TDGQ13569 410 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 SEZ6Q53EL9 994 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 PPM1LQ5SGD2 360 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 CWF19L1Q69YN2 538 aaKnown RBP11.1□□□□□ -0.63
COL5A1-202ENST00000371820 ANKRD40Q6AI12 368 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 ZNF280DQ6N043 979 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 ZNF720Q7Z2F6 126 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 ZNF572Q7Z3I7 529 aaPredicted RBP11.1□□□□□ -0.63
COL5A1-202ENST00000371820 MMGT1Q8N4V1 131 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 ACRBPQ8NEB7 543 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 BEST2Q8NFU1 509 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 NEK11Q8NG66 645 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 KIF12Q96FN5 646 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 SUSD3Q96L08 255 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 ACCSQ96QU6 501 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 FIZ1Q96SL8 496 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 CLSTN3Q9BQT9 956 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 OXCT2Q9BYC2 517 aaPredicted RBP11.1□□□□□ -0.63
COL5A1-202ENST00000371820 PRKD2Q9BZL6 878 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 TTYH3Q9C0H2 523 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 NDST4Q9H3R1 872 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 MFSD1Q9H3U5 465 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 DEF6Q9H4E7 631 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 WDR6Q9NNW5 1121 aaKnown RBP11.1□□□□□ -0.63
COL5A1-202ENST00000371820 DUSP12Q9UNI6 340 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 DERAQ9Y315 318 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 DAAM1Q9Y4D1 1078 aa11.1□□□□□ -0.63
COL5A1-202ENST00000371820 BZW2Q9Y6E2 419 aaKnown RBP11.1□□□□□ -0.63
COL5A1-202ENST00000371820 POLR3GO15318 223 aaPredicted RBP11.09□□□□□ -0.63
COL5A1-202ENST00000371820 OPA1O60313 960 aa11.09□□□□□ -0.63
COL5A1-202ENST00000371820 N4BP1O75113 896 aaKnown RBP11.09□□□□□ -0.63
COL5A1-202ENST00000371820 RFPL2O75678 378 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms