RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 RHOXF2Q9BQY4 288 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 PARD6BQ9BYG5 372 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 SNX25Q9H3E2 840 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 WDR35Q9P2L0 1181 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 NME7Q9Y5B8 376 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 PODXLO00592 558 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 PROSCO94903 275 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 GNL1P36915 607 aaPredicted RBP19.2■□□□□ 0.66
VIM-201ENST00000224237 GRIK3Q13003 919 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 PDCLQ13371 301 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 ALG3Q92685 438 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 KRT35Q92764 455 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 C18orf8Q96DM3 657 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 FTHL17Q9BXU8 183 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 SYNCQ9H7C4 482 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 RBM12Q9NTZ6 932 aaKnown RBP19.2■□□□□ 0.66
VIM-201ENST00000224237 PCDHA3Q9Y5H8 950 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 PQBP1O60828 265 aaKnown RBP19.19■□□□□ 0.66
VIM-201ENST00000224237 WARSP23381 471 aaKnown RBP19.19■□□□□ 0.66
VIM-201ENST00000224237 MNX1P50219 401 aaPredicted RBP19.19■□□□□ 0.66
VIM-201ENST00000224237 PEX5P50542 639 aa19.19■□□□□ 0.66
VIM-201ENST00000224237 CLCNKBP51801 687 aa19.19■□□□□ 0.66
VIM-201ENST00000224237 RNASE9P60153 205 aaKnown RBP19.19■□□□□ 0.66
VIM-201ENST00000224237 GOLGA7BQ2TAP0 167 aa19.19■□□□□ 0.66
VIM-201ENST00000224237 PPP1R26Q5T8A7 1209 aaPredicted RBP19.19■□□□□ 0.66
VIM-201ENST00000224237 CYP4A22Q5TCH4 519 aa19.19■□□□□ 0.66
VIM-201ENST00000224237 ARHGAP17Q68EM7 881 aa19.19■□□□□ 0.66
VIM-201ENST00000224237 SLC24A5Q71RS6 500 aa19.19■□□□□ 0.66
VIM-201ENST00000224237 ZNF598Q86UK7 904 aaKnown RBP19.19■□□□□ 0.66
VIM-201ENST00000224237 CRYBG2Q8N1P7 616 aa19.19■□□□□ 0.66
VIM-201ENST00000224237 RNPC3Q96LT9 517 aaKnown RBP19.19■□□□□ 0.66
VIM-201ENST00000224237 CPXM1Q96SM3 734 aa19.19■□□□□ 0.66
VIM-201ENST00000224237 NAP1L3Q99457 506 aaPredicted RBP19.19■□□□□ 0.66
VIM-201ENST00000224237 MIS12Q9H081 205 aa19.19■□□□□ 0.66
VIM-201ENST00000224237 IP6K2Q9UHH9 426 aa19.19■□□□□ 0.66
VIM-201ENST00000224237 TMEM59LQ9UK28 342 aa19.19■□□□□ 0.66
VIM-201ENST00000224237 TARSL2A2RTX5 802 aaKnown RBP19.18■□□□□ 0.66
VIM-201ENST00000224237 TMEM191CA6NGB0 347 aa19.18■□□□□ 0.66
VIM-201ENST00000224237 CYB561D2O14569 222 aa19.18■□□□□ 0.66
VIM-201ENST00000224237 FGFR1P11362 822 aa19.18■□□□□ 0.66
VIM-201ENST00000224237 IGFBP6P24592 240 aaPredicted RBP19.18■□□□□ 0.66
VIM-201ENST00000224237 MAN1A1P33908 653 aa19.18■□□□□ 0.66
VIM-201ENST00000224237 GABRB2P47870 512 aa19.18■□□□□ 0.66
VIM-201ENST00000224237 PPP1R15BQ5SWA1 713 aa19.18■□□□□ 0.66
VIM-201ENST00000224237 DCUN1D2Q6PH85 259 aa19.18■□□□□ 0.66
VIM-201ENST00000224237 IPO4Q8TEX9 1081 aaKnown RBP19.18■□□□□ 0.66
VIM-201ENST00000224237 TNIP3Q96KP6 325 aa19.18■□□□□ 0.66
VIM-201ENST00000224237 MCEEQ96PE7 176 aa19.18■□□□□ 0.66
VIM-201ENST00000224237 HESX1Q9UBX0 185 aa19.18■□□□□ 0.66
VIM-201ENST00000224237 TDRD15B5MCY1 1934 aaKnown RBP19.18■□□□□ 0.66
VIM-201ENST00000224237 C9IYK1 514 aa19.18■□□□□ 0.66
VIM-201ENST00000224237 PITPNM1O00562 1244 aa19.18■□□□□ 0.66
VIM-201ENST00000224237 EOMESO95936 686 aa19.18■□□□□ 0.66
VIM-201ENST00000224237 SETSIPP0DME0 302 aa19.18■□□□□ 0.66
VIM-201ENST00000224237 HSPA8P11142 646 aaKnown RBP19.18■□□□□ 0.66
VIM-201ENST00000224237 MARCKSL1P49006 195 aa19.18■□□□□ 0.66
VIM-201ENST00000224237 RPL7AP62424 266 aaKnown RBP19.18■□□□□ 0.66
VIM-201ENST00000224237 UPP1Q16831 310 aa19.18■□□□□ 0.66
VIM-201ENST00000224237 RTN4RL1Q86UN2 441 aaPredicted RBP19.18■□□□□ 0.66
VIM-201ENST00000224237 UBA3Q8TBC4 463 aa19.18■□□□□ 0.66
VIM-201ENST00000224237 LINC01599Q8WXQ3 324 aa19.18■□□□□ 0.66
VIM-201ENST00000224237 DPEP3Q9H4B8 488 aa19.18■□□□□ 0.66
VIM-201ENST00000224237 FAM49BQ9NUQ9 324 aa19.18■□□□□ 0.66
VIM-201ENST00000224237 RNF216Q9NWF9 866 aaPredicted RBP19.18■□□□□ 0.66
VIM-201ENST00000224237 RAB21Q9UL25 225 aa19.18■□□□□ 0.66
VIM-201ENST00000224237 MKI67P46013 3256 aaKnown RBP19.17■□□□□ 0.66
VIM-201ENST00000224237 CASTOR2A6NHX0 329 aa19.17■□□□□ 0.66
VIM-201ENST00000224237 INPPL1O15357 1258 aa19.17■□□□□ 0.66
VIM-201ENST00000224237 POMCP01189 267 aa19.17■□□□□ 0.66
VIM-201ENST00000224237 ERBB2P04626 1255 aa19.17■□□□□ 0.66
VIM-201ENST00000224237 RWDD2BP57060 319 aa19.17■□□□□ 0.66
VIM-201ENST00000224237 PSMC1P62191 440 aaKnown RBP19.17■□□□□ 0.66
VIM-201ENST00000224237 ZNF268Q14587 947 aaPredicted RBP19.17■□□□□ 0.66
VIM-201ENST00000224237 PKDCCQ504Y2 493 aa19.17■□□□□ 0.66
VIM-201ENST00000224237 SEL1L2Q5TEA6 688 aa19.17■□□□□ 0.66
VIM-201ENST00000224237 CTU1Q7Z7A3 348 aaKnown RBP19.17■□□□□ 0.66
VIM-201ENST00000224237 XYLT1Q86Y38 959 aa19.17■□□□□ 0.66
VIM-201ENST00000224237 CPNE8Q86YQ8 564 aa19.17■□□□□ 0.66
VIM-201ENST00000224237 DIS3LQ8TF46 1054 aaKnown RBP19.17■□□□□ 0.66
VIM-201ENST00000224237 DDX27Q96GQ7 796 aaKnown RBP19.17■□□□□ 0.66
VIM-201ENST00000224237 ZNF333Q96JL9 665 aa19.17■□□□□ 0.66
VIM-201ENST00000224237 PLVAPQ9BX97 442 aa19.17■□□□□ 0.66
VIM-201ENST00000224237 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.17■□□□□ 0.66
VIM-201ENST00000224237 SIGLEC16A6NMB1 481 aa19.16■□□□□ 0.66
VIM-201ENST00000224237 CCDC188H7C350 402 aa19.16■□□□□ 0.66
VIM-201ENST00000224237 GJB6O95452 261 aa19.16■□□□□ 0.66
VIM-201ENST00000224237 FGGP02679 453 aa19.16■□□□□ 0.66
VIM-201ENST00000224237 PDGFRBP09619 1106 aa19.16■□□□□ 0.66
VIM-201ENST00000224237 MCM3P25205 808 aa19.16■□□□□ 0.66
VIM-201ENST00000224237 LMO2P25791 158 aa19.16■□□□□ 0.66
VIM-201ENST00000224237 GPNMBQ14956 572 aa19.16■□□□□ 0.66
VIM-201ENST00000224237 GLE1Q53GS7 698 aaKnown RBP19.16■□□□□ 0.66
VIM-201ENST00000224237 FAM43BQ6ZT52 329 aaPredicted RBP19.16■□□□□ 0.66
VIM-201ENST00000224237 TMEM86AQ8N2M4 240 aa19.16■□□□□ 0.66
VIM-201ENST00000224237 SENP8Q96LD8 212 aa19.16■□□□□ 0.66
VIM-201ENST00000224237 UROC1Q96N76 676 aa19.16■□□□□ 0.66
VIM-201ENST00000224237 PNKPQ96T60 521 aa19.16■□□□□ 0.66
VIM-201ENST00000224237 TJP2Q9UDY2 1190 aa19.16■□□□□ 0.66
VIM-201ENST00000224237 INPP5FQ9Y2H2 1132 aa19.16■□□□□ 0.66
VIM-201ENST00000224237 CCDC151A5D8V7 595 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms