RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 ANP32BQ92688 251 aaKnown RBP16.06■□□□□ 0.16
TRIM28-207ENST00000597136 HLA-CQ95604 372 aa16.06■□□□□ 0.16
TRIM28-207ENST00000597136 APOL5Q9BWW9 433 aa16.06■□□□□ 0.16
TRIM28-207ENST00000597136 GCNT4Q9P109 453 aa16.06■□□□□ 0.16
TRIM28-207ENST00000597136 HUS1O60921 280 aa16.05■□□□□ 0.16
TRIM28-207ENST00000597136 SLC9A1P19634 815 aa16.05■□□□□ 0.16
TRIM28-207ENST00000597136 PAX3P23760 479 aa16.05■□□□□ 0.16
TRIM28-207ENST00000597136 KLK7P49862 253 aa16.05■□□□□ 0.16
TRIM28-207ENST00000597136 TMEM184AQ6ZMB5 413 aa16.05■□□□□ 0.16
TRIM28-207ENST00000597136 LIMS2Q7Z4I7 341 aa16.05■□□□□ 0.16
TRIM28-207ENST00000597136 EHBP1Q8NDI1 1231 aa16.05■□□□□ 0.16
TRIM28-207ENST00000597136 RAB20Q9NX57 234 aa16.05■□□□□ 0.16
TRIM28-207ENST00000597136 NXF1Q9UBU9 619 aaKnown RBP16.05■□□□□ 0.16
TRIM28-207ENST00000597136 DENND4AQ7Z401 1863 aa16.05■□□□□ 0.16
TRIM28-207ENST00000597136 WDR27A2RRH5 827 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 H7C4K7 107 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 NCK2O43639 380 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 CDH8P55286 799 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 ROR1Q01973 937 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 RAB33AQ14088 237 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 SPECC1LQ69YQ0 1117 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 SLC8B1Q6J4K2 584 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 DPY19L2P1Q6NXN4 242 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 PDXDC1Q6P996 788 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 SYCE2Q6PIF2 218 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.04■□□□□ 0.16
TRIM28-207ENST00000597136 OR10T2Q8NGX3 314 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 KBTBD7Q8WVZ9 684 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 MSLNLQ96KJ4 702 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 MMS19Q96T76 1030 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 INTS2Q9H0H0 1204 aaKnown RBP16.04■□□□□ 0.16
TRIM28-207ENST00000597136 CDH22Q9UJ99 828 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 NME7Q9Y5B8 376 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 ANAPC1Q9H1A4 1944 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 OBSL1O75147 1896 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 ITIH6Q6UXX5 1313 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 VNN2O95498 520 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 GLUD1P00367 558 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 ASS1P00966 412 aaKnown RBP16.04■□□□□ 0.16
TRIM28-207ENST00000597136 LMO2P25791 158 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 ATICP31939 592 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 PIK3CAP42336 1068 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 SGSM1Q2NKQ1 1148 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 ZNF699Q32M78 642 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 ZNF280DQ6N043 979 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 TRIM65Q6PJ69 517 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 LRRTM3Q86VH5 581 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 PPFIBP1Q86W92 1011 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 PCMTD1Q96MG8 357 aaPredicted RBP16.04■□□□□ 0.16
TRIM28-207ENST00000597136 MRPL45Q9BRJ2 306 aaKnown RBP16.04■□□□□ 0.16
TRIM28-207ENST00000597136 LSM14BQ9BX40 385 aaKnown RBP16.04■□□□□ 0.16
TRIM28-207ENST00000597136 SDCBP2Q9H190 292 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 APOBEC3GQ9HC16 384 aaKnown RBP16.04■□□□□ 0.16
TRIM28-207ENST00000597136 PLCB1Q9NQ66 1216 aa16.04■□□□□ 0.16
TRIM28-207ENST00000597136 RFPL2O75678 378 aa16.03■□□□□ 0.16
TRIM28-207ENST00000597136 ABLIM3O94929 683 aa16.03■□□□□ 0.16
TRIM28-207ENST00000597136 SLC34A2O95436 690 aa16.03■□□□□ 0.16
TRIM28-207ENST00000597136 SEC24AO95486 1093 aa16.03■□□□□ 0.16
TRIM28-207ENST00000597136 STAU1O95793 577 aaKnown RBP16.03■□□□□ 0.16
TRIM28-207ENST00000597136 ACAT1P24752 427 aaKnown RBP16.03■□□□□ 0.16
TRIM28-207ENST00000597136 RAP1GAPP47736 663 aa16.03■□□□□ 0.16
TRIM28-207ENST00000597136 APBA1Q02410 837 aa16.03■□□□□ 0.16
TRIM28-207ENST00000597136 CREMQ03060 361 aa16.03■□□□□ 0.16
TRIM28-207ENST00000597136 CCDC142Q17RM4 750 aa16.03■□□□□ 0.16
TRIM28-207ENST00000597136 ANKRD54Q6NXT1 300 aa16.03■□□□□ 0.16
TRIM28-207ENST00000597136 RNF19BQ6ZMZ0 732 aa16.03■□□□□ 0.16
TRIM28-207ENST00000597136 TMC6Q7Z403 805 aa16.03■□□□□ 0.16
TRIM28-207ENST00000597136 METTL23Q86XA0 190 aa16.03■□□□□ 0.16
TRIM28-207ENST00000597136 DRC7Q8IY82 874 aa16.03■□□□□ 0.16
TRIM28-207ENST00000597136 TOP6BLQ8N6T0 577 aa16.03■□□□□ 0.16
TRIM28-207ENST00000597136 KREMEN2Q8NCW0 462 aa16.03■□□□□ 0.16
TRIM28-207ENST00000597136 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.03■□□□□ 0.16
TRIM28-207ENST00000597136 TATDN2Q93075 761 aa16.03■□□□□ 0.16
TRIM28-207ENST00000597136 LPIN3Q9BQK8 851 aa16.03■□□□□ 0.16
TRIM28-207ENST00000597136 SMYD3Q9H7B4 428 aa16.03■□□□□ 0.16
TRIM28-207ENST00000597136 VRTNQ9H8Y1 702 aa16.03■□□□□ 0.16
TRIM28-207ENST00000597136 SIX2Q9NPC8 291 aa16.03■□□□□ 0.16
TRIM28-207ENST00000597136 MAN1C1Q9NR34 630 aa16.03■□□□□ 0.16
TRIM28-207ENST00000597136 FAM207AQ9NSI2 230 aaPredicted RBP16.03■□□□□ 0.16
TRIM28-207ENST00000597136 DSEQ9UL01 958 aa16.03■□□□□ 0.16
TRIM28-207ENST00000597136 COG5Q9UP83 839 aa16.03■□□□□ 0.16
TRIM28-207ENST00000597136 BDP1A6H8Y1 2624 aa16.03■□□□□ 0.16
TRIM28-207ENST00000597136 TRIOO75962 3097 aa16.02■□□□□ 0.16
TRIM28-207ENST00000597136 GABRDO14764 452 aa16.02■□□□□ 0.16
TRIM28-207ENST00000597136 ATP2C2O75185 946 aa16.02■□□□□ 0.16
TRIM28-207ENST00000597136 NOL4O94818 638 aa16.02■□□□□ 0.16
TRIM28-207ENST00000597136 CLSTN1O94985 981 aa16.02■□□□□ 0.16
TRIM28-207ENST00000597136 PDGFRBP09619 1106 aa16.02■□□□□ 0.16
TRIM28-207ENST00000597136 WEE2P0C1S8 567 aa16.02■□□□□ 0.16
TRIM28-207ENST00000597136 ZNF667Q5HYK9 610 aa16.02■□□□□ 0.16
TRIM28-207ENST00000597136 KLHDC7AQ5VTJ3 777 aa16.02■□□□□ 0.16
TRIM28-207ENST00000597136 SCARA5Q6ZMJ2 495 aa16.02■□□□□ 0.16
TRIM28-207ENST00000597136 DPH6Q7L8W6 267 aa16.02■□□□□ 0.16
TRIM28-207ENST00000597136 ADGRF2Q8IZF7 708 aa16.02■□□□□ 0.16
TRIM28-207ENST00000597136 ZNF461Q8TAF7 563 aa16.02■□□□□ 0.16
TRIM28-207ENST00000597136 CASP10Q92851 521 aa16.02■□□□□ 0.16
TRIM28-207ENST00000597136 PGLYRP2Q96PD5 576 aa16.02■□□□□ 0.16
TRIM28-207ENST00000597136 S1PR5Q9H228 398 aa16.02■□□□□ 0.16
TRIM28-207ENST00000597136 TMLHEQ9NVH6 421 aa16.02■□□□□ 0.16
TRIM28-207ENST00000597136 DDX43Q9NXZ2 648 aaKnown RBP16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms