RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 DUSP4Q13115 394 aa14.32□□□□□ -0.12
VPS28-210ENST00000529182 UVSSAQ2YD98 709 aa14.32□□□□□ -0.12
VPS28-210ENST00000529182 CBWD6Q4V339 395 aa14.32□□□□□ -0.12
VPS28-210ENST00000529182 ZNF667Q5HYK9 610 aa14.32□□□□□ -0.12
VPS28-210ENST00000529182 CBWD3Q5JTY5 395 aa14.32□□□□□ -0.12
VPS28-210ENST00000529182 CBWD5Q5RIA9 395 aa14.32□□□□□ -0.12
VPS28-210ENST00000529182 FOXR2Q6PJQ5 311 aa14.32□□□□□ -0.12
VPS28-210ENST00000529182 RBM43Q6ZSC3 357 aaKnown RBP14.32□□□□□ -0.12
VPS28-210ENST00000529182 DPH6Q7L8W6 267 aa14.32□□□□□ -0.12
VPS28-210ENST00000529182 GRASPQ7Z6J2 395 aaPredicted RBP14.32□□□□□ -0.12
VPS28-210ENST00000529182 SEMA4DQ92854 862 aa14.32□□□□□ -0.12
VPS28-210ENST00000529182 SLC35C1Q96A29 364 aa14.32□□□□□ -0.12
VPS28-210ENST00000529182 NECTIN4Q96NY8 510 aa14.32□□□□□ -0.12
VPS28-210ENST00000529182 SDCBP2Q9H190 292 aa14.32□□□□□ -0.12
VPS28-210ENST00000529182 VRTNQ9H8Y1 702 aa14.32□□□□□ -0.12
VPS28-210ENST00000529182 HCFC1R1Q9NWW0 138 aa14.32□□□□□ -0.12
VPS28-210ENST00000529182 PRKAG3Q9UGI9 489 aa14.32□□□□□ -0.12
VPS28-210ENST00000529182 YIPF1Q9Y548 306 aa14.32□□□□□ -0.12
VPS28-210ENST00000529182 INSL5Q9Y5Q6 135 aa14.32□□□□□ -0.12
VPS28-210ENST00000529182 C2orf16Q68DN1 1984 aa14.32□□□□□ -0.12
VPS28-210ENST00000529182 ATP2C2O75185 946 aa14.31□□□□□ -0.12
VPS28-210ENST00000529182 TACC1O75410 805 aa14.31□□□□□ -0.12
VPS28-210ENST00000529182 ASS1P00966 412 aaKnown RBP14.31□□□□□ -0.12
VPS28-210ENST00000529182 LRG1P02750 347 aa14.31□□□□□ -0.12
VPS28-210ENST00000529182 PDGFRBP09619 1106 aa14.31□□□□□ -0.12
VPS28-210ENST00000529182 HOXA9P31269 272 aa14.31□□□□□ -0.12
VPS28-210ENST00000529182 SSTR3P32745 418 aaPredicted RBP14.31□□□□□ -0.12
VPS28-210ENST00000529182 GTF2H1P32780 548 aa14.31□□□□□ -0.12
VPS28-210ENST00000529182 LHX1P48742 406 aa14.31□□□□□ -0.12
VPS28-210ENST00000529182 PSMC1P62191 440 aaKnown RBP14.31□□□□□ -0.12
VPS28-210ENST00000529182 TSPY1Q01534 308 aa14.31□□□□□ -0.12
VPS28-210ENST00000529182 TWF1Q12792 350 aa14.31□□□□□ -0.12
VPS28-210ENST00000529182 SGSM1Q2NKQ1 1148 aa14.31□□□□□ -0.12
VPS28-210ENST00000529182 INTS6LQ5JSJ4 861 aaKnown RBP14.31□□□□□ -0.12
VPS28-210ENST00000529182 KRT39Q6A163 491 aa14.31□□□□□ -0.12
VPS28-210ENST00000529182 FRMD5Q7Z6J6 570 aa14.31□□□□□ -0.12
VPS28-210ENST00000529182 SPATA18Q8TC71 538 aa14.31□□□□□ -0.12
VPS28-210ENST00000529182 LPIN3Q9BQK8 851 aa14.31□□□□□ -0.12
VPS28-210ENST00000529182 ACBD6Q9BR61 282 aa14.31□□□□□ -0.12
VPS28-210ENST00000529182 APOBEC3GQ9HC16 384 aaKnown RBP14.31□□□□□ -0.12
VPS28-210ENST00000529182 METTL14Q9HCE5 456 aaKnown RBP14.31□□□□□ -0.12
VPS28-210ENST00000529182 ABI2Q9NYB9 513 aaPredicted RBP14.31□□□□□ -0.12
VPS28-210ENST00000529182 TMEM63CQ9P1W3 806 aa14.31□□□□□ -0.12
VPS28-210ENST00000529182 DNMT3BQ9UBC3 853 aaKnown RBP14.31□□□□□ -0.12
VPS28-210ENST00000529182 GTF3C4Q9UKN8 822 aa14.31□□□□□ -0.12
VPS28-210ENST00000529182 MYBPHLA2RUH7 354 aa14.3□□□□□ -0.12
VPS28-210ENST00000529182 C19orf67A6NJJ6 358 aa14.3□□□□□ -0.12
VPS28-210ENST00000529182 C2CD4DB7Z1M9 353 aa14.3□□□□□ -0.12
VPS28-210ENST00000529182 XYLBO75191 536 aa14.3□□□□□ -0.12
VPS28-210ENST00000529182 ASPAP45381 313 aa14.3□□□□□ -0.12
VPS28-210ENST00000529182 CCDC183Q5T5S1 534 aa14.3□□□□□ -0.12
VPS28-210ENST00000529182 CYP26C1Q6V0L0 522 aa14.3□□□□□ -0.12
VPS28-210ENST00000529182 DCP1BQ8IZD4 617 aaKnown RBP14.3□□□□□ -0.12
VPS28-210ENST00000529182 GJD3Q8N144 294 aa14.3□□□□□ -0.12
VPS28-210ENST00000529182 OR6B3Q8NGW1 331 aa14.3□□□□□ -0.12
VPS28-210ENST00000529182 TAF4BQ92750 862 aa14.3□□□□□ -0.12
VPS28-210ENST00000529182 PKMYT1Q99640 499 aa14.3□□□□□ -0.12
VPS28-210ENST00000529182 SEPT5Q99719 369 aaPredicted RBP14.3□□□□□ -0.12
VPS28-210ENST00000529182 SYT15Q9BQS2 421 aa14.3□□□□□ -0.12
VPS28-210ENST00000529182 RHOBTB2Q9BYZ6 727 aa14.3□□□□□ -0.12
VPS28-210ENST00000529182 SNX25Q9H3E2 840 aa14.3□□□□□ -0.12
VPS28-210ENST00000529182 DPEP3Q9H4B8 488 aa14.3□□□□□ -0.12
VPS28-210ENST00000529182 WDR6Q9NNW5 1121 aaKnown RBP14.3□□□□□ -0.12
VPS28-210ENST00000529182 CRTAC1Q9NQ79 661 aa14.3□□□□□ -0.12
VPS28-210ENST00000529182 CEP72Q9P209 647 aa14.3□□□□□ -0.12
VPS28-210ENST00000529182 MAFFQ9ULX9 164 aa14.3□□□□□ -0.12
VPS28-210ENST00000529182 CLUHO75153 1309 aa14.3□□□□□ -0.12
VPS28-210ENST00000529182 DOCK6Q96HP0 2047 aa14.29□□□□□ -0.12
VPS28-210ENST00000529182 LOC730098B7Z3J9 87 aa14.29□□□□□ -0.12
VPS28-210ENST00000529182 STX10O60499 249 aa14.29□□□□□ -0.12
VPS28-210ENST00000529182 N4BP1O75113 896 aaKnown RBP14.29□□□□□ -0.12
VPS28-210ENST00000529182 PCSK1P29120 753 aa14.29□□□□□ -0.12
VPS28-210ENST00000529182 GNL1P36915 607 aaPredicted RBP14.29□□□□□ -0.12
VPS28-210ENST00000529182 NOP14P78316 857 aaKnown RBP14.29□□□□□ -0.12
VPS28-210ENST00000529182 RTL10Q7L3V2 364 aa14.29□□□□□ -0.12
VPS28-210ENST00000529182 IRF2BP1Q8IU81 584 aa14.29□□□□□ -0.12
VPS28-210ENST00000529182 CREBRFQ8IUR6 639 aa14.29□□□□□ -0.12
VPS28-210ENST00000529182 FBXL13Q8NEE6 735 aa14.29□□□□□ -0.12
VPS28-210ENST00000529182 CNOT6LQ96LI5 555 aaKnown RBP14.29□□□□□ -0.12
VPS28-210ENST00000529182 IMPG2Q9BZV3 1241 aa14.29□□□□□ -0.12
VPS28-210ENST00000529182 DNAJC25Q9H1X3 360 aa14.29□□□□□ -0.12
VPS28-210ENST00000529182 RAB20Q9NX57 234 aa14.29□□□□□ -0.12
VPS28-210ENST00000529182 HMGXB4Q9UGU5 601 aa14.29□□□□□ -0.12
VPS28-210ENST00000529182 CDH9Q9ULB4 789 aa14.29□□□□□ -0.12
VPS28-210ENST00000529182 A8MXQ7 604 aa14.28□□□□□ -0.12
VPS28-210ENST00000529182 DLL1O00548 723 aa14.28□□□□□ -0.12
VPS28-210ENST00000529182 FGFR1OPO95684 399 aaKnown RBP14.28□□□□□ -0.12
VPS28-210ENST00000529182 POU2F2P09086 479 aa14.28□□□□□ -0.12
VPS28-210ENST00000529182 FMO5P49326 533 aa14.28□□□□□ -0.12
VPS28-210ENST00000529182 GPR15P49685 360 aa14.28□□□□□ -0.12
VPS28-210ENST00000529182 MARSP56192 900 aaKnown RBP14.28□□□□□ -0.12
VPS28-210ENST00000529182 ORC1Q13415 861 aa14.28□□□□□ -0.12
VPS28-210ENST00000529182 MGAT5BQ3V5L5 792 aa14.28□□□□□ -0.12
VPS28-210ENST00000529182 CAVIN1Q6NZI2 390 aaKnown RBP14.28□□□□□ -0.12
VPS28-210ENST00000529182 FAM171BQ6P995 826 aa14.28□□□□□ -0.12
VPS28-210ENST00000529182 GET4Q7L5D6 327 aaPredicted RBP14.28□□□□□ -0.12
VPS28-210ENST00000529182 TRIM59Q8IWR1 403 aa14.28□□□□□ -0.12
VPS28-210ENST00000529182 HS6ST3Q8IZP7 471 aa14.28□□□□□ -0.12
VPS28-210ENST00000529182 STKLD1Q8NE28 680 aa14.28□□□□□ -0.12
VPS28-210ENST00000529182 ITFG1Q8TB96 612 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms