RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 MS4A14Q96JA4 679 aa19.25■□□□□ 0.67
VIM-201ENST00000224237 ADAM2Q99965 735 aa19.25■□□□□ 0.67
VIM-201ENST00000224237 MRPL45Q9BRJ2 306 aaKnown RBP19.25■□□□□ 0.67
VIM-201ENST00000224237 PARVAQ9NVD7 372 aa19.25■□□□□ 0.67
VIM-201ENST00000224237 ARL5CA6NH57 179 aa19.24■□□□□ 0.67
VIM-201ENST00000224237 O00370 1275 aa19.24■□□□□ 0.67
VIM-201ENST00000224237 DDX3YO15523 660 aaKnown RBP19.24■□□□□ 0.67
VIM-201ENST00000224237 COMTP21964 271 aa19.24■□□□□ 0.67
VIM-201ENST00000224237 MBTPS1Q14703 1052 aa19.24■□□□□ 0.67
VIM-201ENST00000224237 SOWAHAQ2M3V2 549 aa19.24■□□□□ 0.67
VIM-201ENST00000224237 DENND1BQ6P3S1 775 aa19.24■□□□□ 0.67
VIM-201ENST00000224237 ERICH1Q86X53 443 aa19.24■□□□□ 0.67
VIM-201ENST00000224237 UBL4BQ8N7F7 174 aa19.24■□□□□ 0.67
VIM-201ENST00000224237 ACTRT1Q8TDG2 376 aa19.24■□□□□ 0.67
VIM-201ENST00000224237 PGBD4Q96DM1 585 aa19.24■□□□□ 0.67
VIM-201ENST00000224237 BTBD6Q96KE9 485 aa19.24■□□□□ 0.67
VIM-201ENST00000224237 CARD9Q9H257 536 aa19.24■□□□□ 0.67
VIM-201ENST00000224237 STRIP2Q9ULQ0 834 aa19.24■□□□□ 0.67
VIM-201ENST00000224237 MYO1FO00160 1098 aa19.24■□□□□ 0.67
VIM-201ENST00000224237 MICAL2O94851 1124 aa19.24■□□□□ 0.67
VIM-201ENST00000224237 AFF1P51825 1210 aaKnown RBP19.24■□□□□ 0.67
VIM-201ENST00000224237 MAMLD1Q13495 774 aa19.24■□□□□ 0.67
VIM-201ENST00000224237 DNAJC5GQ8N7S2 189 aa19.24■□□□□ 0.67
VIM-201ENST00000224237 MSANTD4Q8NCY6 345 aa19.24■□□□□ 0.67
VIM-201ENST00000224237 WNT8AQ9H1J5 351 aa19.24■□□□□ 0.67
VIM-201ENST00000224237 TSPYL2Q9H2G4 693 aaPredicted RBP19.24■□□□□ 0.67
VIM-201ENST00000224237 RSAD1Q9HA92 442 aa19.24■□□□□ 0.67
VIM-201ENST00000224237 UBN1Q9NPG3 1134 aa19.24■□□□□ 0.67
VIM-201ENST00000224237 EHD2Q9NZN4 543 aa19.24■□□□□ 0.67
VIM-201ENST00000224237 SPTLC1O15269 473 aa19.23■□□□□ 0.67
VIM-201ENST00000224237 SPOPO43791 374 aa19.23■□□□□ 0.67
VIM-201ENST00000224237 CDK7P50613 346 aa19.23■□□□□ 0.67
VIM-201ENST00000224237 LILRA4P59901 499 aa19.23■□□□□ 0.67
VIM-201ENST00000224237 C2orf54Q08AI8 447 aa19.23■□□□□ 0.67
VIM-201ENST00000224237 DPH6Q7L8W6 267 aa19.23■□□□□ 0.67
VIM-201ENST00000224237 RASGEF1CQ8N431 466 aa19.23■□□□□ 0.67
VIM-201ENST00000224237 APPL2Q8NEU8 664 aa19.23■□□□□ 0.67
VIM-201ENST00000224237 OR6B3Q8NGW1 331 aa19.23■□□□□ 0.67
VIM-201ENST00000224237 DNAI2Q9GZS0 605 aa19.23■□□□□ 0.67
VIM-201ENST00000224237 SMARCAL1Q9NZC9 954 aa19.23■□□□□ 0.67
VIM-201ENST00000224237 OGDHLQ9ULD0 1010 aa19.23■□□□□ 0.67
VIM-201ENST00000224237 M0QYV0 167 aa19.22■□□□□ 0.67
VIM-201ENST00000224237 CEP104O60308 925 aa19.22■□□□□ 0.67
VIM-201ENST00000224237 SLC1A1P43005 524 aa19.22■□□□□ 0.67
VIM-201ENST00000224237 LLGL2Q6P1M3 1020 aa19.22■□□□□ 0.67
VIM-201ENST00000224237 LIMS2Q7Z4I7 341 aa19.22■□□□□ 0.67
VIM-201ENST00000224237 PHLDB2Q86SQ0 1253 aa19.22■□□□□ 0.67
VIM-201ENST00000224237 CD101Q93033 1021 aa19.22■□□□□ 0.67
VIM-201ENST00000224237 CCDC66A2RUB6 948 aa19.22■□□□□ 0.67
VIM-201ENST00000224237 PGRMC1O00264 195 aaKnown RBP19.22■□□□□ 0.67
VIM-201ENST00000224237 HUS1O60921 280 aa19.22■□□□□ 0.67
VIM-201ENST00000224237 SCNN1GP51170 649 aa19.22■□□□□ 0.67
VIM-201ENST00000224237 TAP1Q03518 808 aa19.22■□□□□ 0.67
VIM-201ENST00000224237 PTPN20Q4JDL3 420 aa19.22■□□□□ 0.67
VIM-201ENST00000224237 LCLAT1Q6UWP7 414 aa19.22■□□□□ 0.67
VIM-201ENST00000224237 FAM126BQ8IXS8 530 aa19.22■□□□□ 0.67
VIM-201ENST00000224237 MMGT1Q8N4V1 131 aa19.22■□□□□ 0.67
VIM-201ENST00000224237 TOP6BLQ8N6T0 577 aa19.22■□□□□ 0.67
VIM-201ENST00000224237 C3orf20Q8ND61 904 aa19.22■□□□□ 0.67
VIM-201ENST00000224237 FEZF2Q8TBJ5 459 aa19.22■□□□□ 0.67
VIM-201ENST00000224237 KBTBD7Q8WVZ9 684 aa19.22■□□□□ 0.67
VIM-201ENST00000224237 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.22■□□□□ 0.672e-7■■■■□ 26.5
VIM-201ENST00000224237 EPC1Q9H2F5 836 aa19.22■□□□□ 0.67
VIM-201ENST00000224237 ANKZF1Q9H8Y5 726 aa19.22■□□□□ 0.67
VIM-201ENST00000224237 ARGLU1Q9NWB6 273 aaPredicted RBP19.22■□□□□ 0.67
VIM-201ENST00000224237 CACNG4Q9UBN1 327 aa19.22■□□□□ 0.67
VIM-201ENST00000224237 LCMT1Q9UIC8 334 aa19.22■□□□□ 0.67
VIM-201ENST00000224237 TSPAN16Q9UKR8 245 aa19.22■□□□□ 0.67
VIM-201ENST00000224237 A8MXQ7 604 aa19.21■□□□□ 0.67
VIM-201ENST00000224237 CTNNA2P26232 953 aa19.21■□□□□ 0.67
VIM-201ENST00000224237 CTNNA1P35221 906 aaKnown RBP19.21■□□□□ 0.67
VIM-201ENST00000224237 GSCP56915 257 aaPredicted RBP19.21■□□□□ 0.67
VIM-201ENST00000224237 CCDC70Q6NSX1 233 aa19.21■□□□□ 0.67
VIM-201ENST00000224237 DNAJC24Q6P3W2 148 aa19.21■□□□□ 0.67
VIM-201ENST00000224237 ACOT1Q86TX2 421 aa19.21■□□□□ 0.67
VIM-201ENST00000224237 RNF169Q8NCN4 708 aa19.21■□□□□ 0.67
VIM-201ENST00000224237 TRIM7Q9C029 511 aa19.21■□□□□ 0.67
VIM-201ENST00000224237 RGS18Q9NS28 235 aa19.21■□□□□ 0.67
VIM-201ENST00000224237 MIOSQ9NXC5 875 aa19.21■□□□□ 0.67
VIM-201ENST00000224237 CYTH4Q9UIA0 394 aa19.21■□□□□ 0.67
VIM-201ENST00000224237 TTC7AQ9ULT0 858 aaPredicted RBP19.21■□□□□ 0.67
VIM-201ENST00000224237 L1RE1Q9UN81 338 aa19.21■□□□□ 0.67
VIM-201ENST00000224237 TCRBV5S1A1TA0A578 114 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 TUBBP07437 444 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 FAM163BP0C2L3 166 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 RHOXF2BP0C7M4 288 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 H2AFXP16104 143 aaPredicted RBP19.2■□□□□ 0.66
VIM-201ENST00000224237 SELPP16109 830 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 RPL9P32969 192 aaKnown RBP19.2■□□□□ 0.66
VIM-201ENST00000224237 GPD2P43304 727 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 ATN1P54259 1190 aaPredicted RBP19.2■□□□□ 0.66
VIM-201ENST00000224237 BFSP2Q13515 415 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 CLUL1Q15846 466 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 DCAF12L1Q5VU92 463 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 FBXO38Q6PIJ6 1188 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 LRRC8DQ7L1W4 858 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 ECHDC2Q86YB7 292 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 ADGRF2Q8IZF7 708 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 C12orf29Q8N999 325 aa19.2■□□□□ 0.66
VIM-201ENST00000224237 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 114.8 ms