RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 CACNA1IQ9P0X4 2223 aa20.57■□□□□ 0.88
CCDC28A-203ENST00000617445 MIA3Q5JRA6 1907 aa20.57■□□□□ 0.88
CCDC28A-203ENST00000617445 GFRA3O60609 400 aa20.56■□□□□ 0.88
CCDC28A-203ENST00000617445 MOSPD3O75425 235 aa20.56■□□□□ 0.88
CCDC28A-203ENST00000617445 FCARP24071 287 aa20.56■□□□□ 0.88
CCDC28A-203ENST00000617445 MAGEA9P43362 315 aa20.56■□□□□ 0.88
CCDC28A-203ENST00000617445 SNRPFP62306 86 aaKnown RBP20.56■□□□□ 0.88
CCDC28A-203ENST00000617445 ASIC1P78348 528 aa20.56■□□□□ 0.88
CCDC28A-203ENST00000617445 POTEHQ6S545 545 aa20.56■□□□□ 0.88
CCDC28A-203ENST00000617445 DCP1BQ8IZD4 617 aaKnown RBP20.56■□□□□ 0.88
CCDC28A-203ENST00000617445 OR10T2Q8NGX3 314 aa20.56■□□□□ 0.88
CCDC28A-203ENST00000617445 SPATA18Q8TC71 538 aa20.56■□□□□ 0.88
CCDC28A-203ENST00000617445 SPPL2BQ8TCT7 592 aa20.56■□□□□ 0.88
CCDC28A-203ENST00000617445 DEPDC1BQ8WUY9 529 aa20.56■□□□□ 0.88
CCDC28A-203ENST00000617445 TRMT61BQ9BVS5 477 aaKnown RBP20.56■□□□□ 0.88
CCDC28A-203ENST00000617445 LRRC3Q9BY71 257 aa20.56■□□□□ 0.88
CCDC28A-203ENST00000617445 FGFBP2Q9BYJ0 223 aa20.56■□□□□ 0.88
CCDC28A-203ENST00000617445 PLA2G2FQ9BZM2 168 aa20.56■□□□□ 0.88
CCDC28A-203ENST00000617445 DNAJC25Q9H1X3 360 aa20.56■□□□□ 0.88
CCDC28A-203ENST00000617445 CRISPLD1Q9H336 500 aa20.56■□□□□ 0.88
CCDC28A-203ENST00000617445 TRPV5Q9NQA5 729 aa20.56■□□□□ 0.88
CCDC28A-203ENST00000617445 DLGAP2Q9P1A6 1054 aa20.56■□□□□ 0.88
CCDC28A-203ENST00000617445 SLC27A5Q9Y2P5 690 aa20.56■□□□□ 0.88
CCDC28A-203ENST00000617445 ZNF233A6NK53 670 aa20.55■□□□□ 0.88
CCDC28A-203ENST00000617445 PSMC3P17980 439 aa20.55■□□□□ 0.88
CCDC28A-203ENST00000617445 ME1P48163 572 aa20.55■□□□□ 0.88
CCDC28A-203ENST00000617445 RBP5P82980 135 aa20.55■□□□□ 0.88
CCDC28A-203ENST00000617445 VEPH1Q14D04 833 aa20.55■□□□□ 0.88
CCDC28A-203ENST00000617445 SLC39A12Q504Y0 691 aa20.55■□□□□ 0.88
CCDC28A-203ENST00000617445 FOXD4L5Q5VV16 416 aaPredicted RBP20.55■□□□□ 0.88
CCDC28A-203ENST00000617445 WSCD1Q658N2 575 aa20.55■□□□□ 0.88
CCDC28A-203ENST00000617445 DNAJB7Q7Z6W7 309 aaPredicted RBP20.55■□□□□ 0.88
CCDC28A-203ENST00000617445 TMC8Q8IU68 726 aa20.55■□□□□ 0.88
CCDC28A-203ENST00000617445 TMEM86AQ8N2M4 240 aa20.55■□□□□ 0.88
CCDC28A-203ENST00000617445 CSGALNACT2Q8N6G5 542 aa20.55■□□□□ 0.88
CCDC28A-203ENST00000617445 C1orf127Q8N9H9 656 aa20.55■□□□□ 0.88
CCDC28A-203ENST00000617445 SHKBP1Q8TBC3 707 aa20.55■□□□□ 0.88
CCDC28A-203ENST00000617445 ZNF507Q8TCN5 953 aa20.55■□□□□ 0.88
CCDC28A-203ENST00000617445 FOXD4L4Q8WXT5 416 aaPredicted RBP20.55■□□□□ 0.88
CCDC28A-203ENST00000617445 IRF7Q92985 503 aa20.55■□□□□ 0.88
CCDC28A-203ENST00000617445 TMEM209Q96SK2 561 aa20.55■□□□□ 0.88
CCDC28A-203ENST00000617445 PCIF1Q9H4Z3 704 aa20.55■□□□□ 0.88
CCDC28A-203ENST00000617445 BRD9Q9H8M2 597 aa20.55■□□□□ 0.88
CCDC28A-203ENST00000617445 AGAP1Q9UPQ3 857 aa20.55■□□□□ 0.88
CCDC28A-203ENST00000617445 MRPS17Q9Y2R5 130 aaKnown RBP20.55■□□□□ 0.88
CCDC28A-203ENST00000617445 R3HCC1Q9Y3T6 440 aaKnown RBP20.55■□□□□ 0.88
CCDC28A-203ENST00000617445 UBE4BO95155 1302 aa20.54■□□□□ 0.88
CCDC28A-203ENST00000617445 GOLGA8IPA6NC78 632 aa20.54■□□□□ 0.88
CCDC28A-203ENST00000617445 GOLGA8JA6NMD2 632 aa20.54■□□□□ 0.88
CCDC28A-203ENST00000617445 NCAM2O15394 837 aa20.54■□□□□ 0.88
CCDC28A-203ENST00000617445 POLR2DO15514 142 aaKnown RBP20.54■□□□□ 0.88
CCDC28A-203ENST00000617445 HUS1O60921 280 aa20.54■□□□□ 0.88
CCDC28A-203ENST00000617445 ITGB3P05106 788 aa20.54■□□□□ 0.88
CCDC28A-203ENST00000617445 DCNP07585 359 aaKnown RBP20.54■□□□□ 0.88
CCDC28A-203ENST00000617445 POLR2BP30876 1174 aaKnown RBP20.54■□□□□ 0.88
CCDC28A-203ENST00000617445 TEAD2Q15562 447 aa20.54■□□□□ 0.88
CCDC28A-203ENST00000617445 FAM26FQ5R3K3 315 aa20.54■□□□□ 0.88
CCDC28A-203ENST00000617445 ZNF852Q6ZMS4 543 aa20.54■□□□□ 0.88
CCDC28A-203ENST00000617445 UNC13DQ70J99 1090 aa20.54■□□□□ 0.88
CCDC28A-203ENST00000617445 ZSWIM2Q8NEG5 633 aa20.54■□□□□ 0.88
CCDC28A-203ENST00000617445 ZSCAN18Q8TBC5 510 aaPredicted RBP20.54■□□□□ 0.88
CCDC28A-203ENST00000617445 ANKRD36BP1Q96IX9 119 aa20.54■□□□□ 0.88
CCDC28A-203ENST00000617445 ZSWIM3Q96MP5 696 aa20.54■□□□□ 0.88
CCDC28A-203ENST00000617445 BCO2Q9BYV7 579 aa20.54■□□□□ 0.88
CCDC28A-203ENST00000617445 FOXQ1Q9C009 403 aa20.54■□□□□ 0.88
CCDC28A-203ENST00000617445 SEMA4AQ9H3S1 761 aa20.54■□□□□ 0.88
CCDC28A-203ENST00000617445 SLITRK6Q9H5Y7 841 aa20.54■□□□□ 0.88
CCDC28A-203ENST00000617445 GDAP2Q9NXN4 497 aa20.54■□□□□ 0.88
CCDC28A-203ENST00000617445 PCDHA7Q9UN72 937 aa20.54■□□□□ 0.88
CCDC28A-203ENST00000617445 PVALEFA0A1B0GWK0 134 aa20.53■□□□□ 0.88
CCDC28A-203ENST00000617445 MAN2B1O00754 1011 aa20.53■□□□□ 0.88
CCDC28A-203ENST00000617445 TMEM191BP0C7N4 346 aa20.53■□□□□ 0.88
CCDC28A-203ENST00000617445 TSPY1Q01534 308 aa20.53■□□□□ 0.88
CCDC28A-203ENST00000617445 NFE2Q16621 373 aaPredicted RBP20.53■□□□□ 0.88
CCDC28A-203ENST00000617445 MGAT5BQ3V5L5 792 aa20.53■□□□□ 0.88
CCDC28A-203ENST00000617445 ARHGAP15Q53QZ3 475 aa20.53■□□□□ 0.88
CCDC28A-203ENST00000617445 RESP18Q5W5W9 173 aa20.53■□□□□ 0.88
CCDC28A-203ENST00000617445 EPM2AIP1Q7L775 607 aaPredicted RBP20.53■□□□□ 0.88
CCDC28A-203ENST00000617445 C1orf210Q8IVY1 113 aa20.53■□□□□ 0.88
CCDC28A-203ENST00000617445 MFSD6LQ8IWD5 586 aa20.53■□□□□ 0.88
CCDC28A-203ENST00000617445 NKD2Q969F2 451 aaPredicted RBP20.53■□□□□ 0.88
CCDC28A-203ENST00000617445 ACBD6Q9BR61 282 aa20.53■□□□□ 0.88
CCDC28A-203ENST00000617445 PDE11AQ9HCR9 933 aa20.53■□□□□ 0.88
CCDC28A-203ENST00000617445 CGNQ9P2M7 1197 aaKnown RBP20.53■□□□□ 0.88
CCDC28A-203ENST00000617445 ZMYM5Q9UJ78 669 aa20.53■□□□□ 0.88
CCDC28A-203ENST00000617445 RCOR1Q9UKL0 485 aa20.53■□□□□ 0.88
CCDC28A-203ENST00000617445 A0A1W2PRU2 124 aa20.52■□□□□ 0.88
CCDC28A-203ENST00000617445 FAM170BA6NMN3 283 aa20.52■□□□□ 0.88
CCDC28A-203ENST00000617445 TULP1O00294 542 aaPredicted RBP20.52■□□□□ 0.88
CCDC28A-203ENST00000617445 GLULP15104 373 aa20.52■□□□□ 0.88
CCDC28A-203ENST00000617445 GJA1P17302 382 aa20.52■□□□□ 0.88
CCDC28A-203ENST00000617445 WEE1P30291 646 aa20.52■□□□□ 0.88
CCDC28A-203ENST00000617445 MLLT6P55198 1093 aaPredicted RBP20.52■□□□□ 0.88
CCDC28A-203ENST00000617445 WNT7BP56706 349 aa20.52■□□□□ 0.88
CCDC28A-203ENST00000617445 MYO1EQ12965 1108 aa20.52■□□□□ 0.88
CCDC28A-203ENST00000617445 UBXN2BQ14CS0 331 aa20.52■□□□□ 0.88
CCDC28A-203ENST00000617445 DUOXA2Q1HG44 320 aa20.52■□□□□ 0.88
CCDC28A-203ENST00000617445 VITQ6UXI7 678 aa20.52■□□□□ 0.88
CCDC28A-203ENST00000617445 TPRG1Q6ZUI0 275 aa20.52■□□□□ 0.88
CCDC28A-203ENST00000617445 LRRTM3Q86VH5 581 aa20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms