RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 CTU1Q7Z7A3 348 aaKnown RBP17.91■□□□□ 0.46
LDLR-206ENST00000557958 RSPH3Q86UC2 560 aa17.91■□□□□ 0.46
LDLR-206ENST00000557958 KRT12Q99456 494 aa17.91■□□□□ 0.46
LDLR-206ENST00000557958 PCDHGC3Q9UN70 934 aa17.91■□□□□ 0.46
LDLR-206ENST00000557958 STAU1O95793 577 aaKnown RBP17.9■□□□□ 0.46
LDLR-206ENST00000557958 CALCAP01258 141 aa17.9■□□□□ 0.46
LDLR-206ENST00000557958 FGGP02679 453 aa17.9■□□□□ 0.46
LDLR-206ENST00000557958 WEE2P0C1S8 567 aa17.9■□□□□ 0.46
LDLR-206ENST00000557958 HOXC8P31273 242 aa17.9■□□□□ 0.46
LDLR-206ENST00000557958 CTNNA1P35221 906 aaKnown RBP17.9■□□□□ 0.46
LDLR-206ENST00000557958 MYO1EQ12965 1108 aa17.9■□□□□ 0.46
LDLR-206ENST00000557958 PASD1Q8IV76 773 aa17.9■□□□□ 0.46
LDLR-206ENST00000557958 CCDC26Q8TAB7 109 aa17.9■□□□□ 0.46
LDLR-206ENST00000557958 WNT8BQ93098 351 aa17.9■□□□□ 0.46
LDLR-206ENST00000557958 KIF12Q96FN5 646 aa17.9■□□□□ 0.46
LDLR-206ENST00000557958 TSEN34Q9BSV6 310 aaKnown RBP17.9■□□□□ 0.46
LDLR-206ENST00000557958 SLITRK6Q9H5Y7 841 aa17.9■□□□□ 0.46
LDLR-206ENST00000557958 DPP3Q9NY33 737 aa17.9■□□□□ 0.46
LDLR-206ENST00000557958 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.9■□□□□ 0.46
LDLR-206ENST00000557958 RRM1P23921 792 aa17.9■□□□□ 0.46
LDLR-206ENST00000557958 HOXA11P31270 313 aaPredicted RBP17.9■□□□□ 0.46
LDLR-206ENST00000557958 THPOP40225 353 aa17.9■□□□□ 0.46
LDLR-206ENST00000557958 MAATS1Q7Z4T9 603 aa17.9■□□□□ 0.46
LDLR-206ENST00000557958 HPDLQ96IR7 371 aa17.9■□□□□ 0.46
LDLR-206ENST00000557958 TSPAN18Q96SJ8 248 aa17.9■□□□□ 0.46
LDLR-206ENST00000557958 C11orf70Q9BRQ4 267 aa17.9■□□□□ 0.46
LDLR-206ENST00000557958 PARVAQ9NVD7 372 aa17.9■□□□□ 0.46
LDLR-206ENST00000557958 ANK1P16157 1881 aa17.89■□□□□ 0.46
LDLR-206ENST00000557958 TRIP12Q14669 1992 aaPredicted RBP17.89■□□□□ 0.45
LDLR-206ENST00000557958 DNAH12Q6ZR08 3092 aa17.89■□□□□ 0.45
LDLR-206ENST00000557958 MAP2K7O14733 419 aa17.89■□□□□ 0.45
LDLR-206ENST00000557958 RPLP2P05387 115 aaKnown RBP17.89■□□□□ 0.45
LDLR-206ENST00000557958 HSPA1AP0DMV8 641 aaKnown RBP17.89■□□□□ 0.45
LDLR-206ENST00000557958 HSPA1BP0DMV9 641 aaKnown RBP17.89■□□□□ 0.45
LDLR-206ENST00000557958 POLR2BP30876 1174 aaKnown RBP17.89■□□□□ 0.45
LDLR-206ENST00000557958 CRYBB1P53674 252 aaPredicted RBP17.89■□□□□ 0.45
LDLR-206ENST00000557958 ZNF394Q53GI3 561 aa17.89■□□□□ 0.45
LDLR-206ENST00000557958 KLHL7Q8IXQ5 586 aa17.89■□□□□ 0.45
LDLR-206ENST00000557958 TMEM40Q8WWA1 233 aa17.89■□□□□ 0.45
LDLR-206ENST00000557958 CD101Q93033 1021 aa17.89■□□□□ 0.45
LDLR-206ENST00000557958 CELF4Q9BZC1 486 aaKnown RBP17.89■□□□□ 0.45
LDLR-206ENST00000557958 PAK6Q9NQU5 681 aaPredicted RBP17.89■□□□□ 0.45
LDLR-206ENST00000557958 CHORDC1Q9UHD1 332 aaPredicted RBP17.89■□□□□ 0.45
LDLR-206ENST00000557958 DMGDHQ9UI17 866 aaKnown RBP17.89■□□□□ 0.45
LDLR-206ENST00000557958 AGAP1Q9UPQ3 857 aa17.89■□□□□ 0.45
LDLR-206ENST00000557958 PCDHA3Q9Y5H8 950 aa17.89■□□□□ 0.45
LDLR-206ENST00000557958 CDY2AQ9Y6F7 541 aa17.89■□□□□ 0.45
LDLR-206ENST00000557958 HEXIM1O94992 359 aaKnown RBP17.88■□□□□ 0.45
LDLR-206ENST00000557958 MMP8P22894 467 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 BRD2P25440 801 aaKnown RBP17.88■□□□□ 0.45
LDLR-206ENST00000557958 TNNT3P45378 269 aaPredicted RBP17.88■□□□□ 0.45
LDLR-206ENST00000557958 EPHB4P54760 987 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 RWDD2BP57060 319 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 MRPS6P82932 125 aaKnown RBP17.88■□□□□ 0.45
LDLR-206ENST00000557958 SNX17Q15036 470 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 MMS22LQ6ZRQ5 1243 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 SERINC5Q86VE9 423 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 BEST2Q8NFU1 509 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.88■□□□□ 0.45
LDLR-206ENST00000557958 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.88■□□□□ 0.45
LDLR-206ENST00000557958 ALG3Q92685 438 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 TRPV6Q9H1D0 765 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 STRIP2Q9ULQ0 834 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 POLIQ9UNA4 740 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 XPOTO43592 962 aaKnown RBP17.88■□□□□ 0.45
LDLR-206ENST00000557958 ZMYND10O75800 440 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 CD19P15391 556 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 CDH5P33151 784 aaPredicted RBP17.88■□□□□ 0.45
LDLR-206ENST00000557958 SLC7A5Q01650 507 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 TAP1Q03518 808 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 PAK2Q13177 524 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 DCAF12L1Q5VU92 463 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 PLEKHA7Q6IQ23 1121 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 EMBQ6PCB8 327 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 SESTD1Q86VW0 696 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 CXorf38Q8TB03 319 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 SNX27Q96L92 541 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 AP1M1Q9BXS5 423 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 LHX5Q9H2C1 402 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 VIPAS39Q9H9C1 493 aa17.88■□□□□ 0.45
LDLR-206ENST00000557958 PIN4Q9Y237 131 aaKnown RBP17.88■□□□□ 0.45
LDLR-206ENST00000557958 MEFVO15553 781 aaPredicted RBP17.87■□□□□ 0.45
LDLR-206ENST00000557958 ATF7P17544 494 aaPredicted RBP17.87■□□□□ 0.45
LDLR-206ENST00000557958 CASP8Q14790 479 aa17.87■□□□□ 0.45
LDLR-206ENST00000557958 SCARA3Q6AZY7 606 aa17.87■□□□□ 0.45
LDLR-206ENST00000557958 EIF1ADQ8N9N8 165 aaKnown RBP17.87■□□□□ 0.45
LDLR-206ENST00000557958 HDAC7Q8WUI4 952 aa17.87■□□□□ 0.45
LDLR-206ENST00000557958 SENP6Q9GZR1 1112 aaPredicted RBP17.87■□□□□ 0.45
LDLR-206ENST00000557958 MTUS1Q9ULD2 1270 aa17.87■□□□□ 0.45
LDLR-206ENST00000557958 SCN10AQ9Y5Y9 1956 aa17.87■□□□□ 0.45
LDLR-206ENST00000557958 TLR3O15455 904 aaKnown RBP17.86■□□□□ 0.45
LDLR-206ENST00000557958 SART1O43290 800 aaKnown RBP17.86■□□□□ 0.45
LDLR-206ENST00000557958 CILPO75339 1184 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 SASH3O75995 380 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 PROSCO94903 275 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 CTCFP49711 727 aaPredicted RBP17.86■□□□□ 0.45
LDLR-206ENST00000557958 PEX5P50542 639 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 GUCY2DQ02846 1103 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 NFX1Q12986 1120 aaKnown RBP17.86■□□□□ 0.45
LDLR-206ENST00000557958 MAMLD1Q13495 774 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms