RNA–Protein interactions for RNA: ENST00000378060.8

VPS36-201, Transcript of vacuolar protein sorting 36 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS36, Length 4,417 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-201ENST00000378060 AP1B1Q10567 949 aa8.8□□□□□ -1
VPS36-201ENST00000378060 SPP2Q13103 211 aa8.8□□□□□ -1
VPS36-201ENST00000378060 COL9A3Q14050 684 aaPredicted RBP8.8□□□□□ -1
VPS36-201ENST00000378060 PWP2Q15269 919 aaKnown RBP8.8□□□□□ -1
VPS36-201ENST00000378060 TBCCQ15814 346 aa8.8□□□□□ -1
VPS36-201ENST00000378060 TMTC4Q5T4D3 741 aa8.8□□□□□ -1
VPS36-201ENST00000378060 STRIP1Q5VSL9 837 aa8.8□□□□□ -1
VPS36-201ENST00000378060 ACAD10Q6JQN1 1059 aa8.8□□□□□ -1
VPS36-201ENST00000378060 C15orf52Q6ZUT6 534 aaKnown RBP8.8□□□□□ -1
VPS36-201ENST00000378060 SETD3Q86TU7 594 aaPredicted RBP8.8□□□□□ -1
VPS36-201ENST00000378060 LCA5Q86VQ0 697 aa8.8□□□□□ -1
VPS36-201ENST00000378060 RDM1Q8NG50 284 aa8.8□□□□□ -1
VPS36-201ENST00000378060 MDM1Q8TC05 714 aa8.8□□□□□ -1
VPS36-201ENST00000378060 ANKRD27Q96NW4 1050 aa8.8□□□□□ -1
VPS36-201ENST00000378060 ACAP3Q96P50 834 aa8.8□□□□□ -1
VPS36-201ENST00000378060 GOLPH3Q9H4A6 298 aa8.8□□□□□ -1
VPS36-201ENST00000378060 AIPL1Q9NZN9 384 aa8.8□□□□□ -1
VPS36-201ENST00000378060 FAM8A1Q9UBU6 413 aa8.8□□□□□ -1
VPS36-201ENST00000378060 TCRBV5S4A2TA0A5A2 114 aa8.8□□□□□ -1
VPS36-201ENST00000378060 B2RBV5 119 aa8.8□□□□□ -1
VPS36-201ENST00000378060 RBP3P10745 1247 aa8.8□□□□□ -1
VPS36-201ENST00000378060 GHRP10912 638 aa8.8□□□□□ -1
VPS36-201ENST00000378060 NQO1P15559 274 aaKnown RBP8.8□□□□□ -1
VPS36-201ENST00000378060 PDGFRAP16234 1089 aa8.8□□□□□ -1
VPS36-201ENST00000378060 COPB2P35606 906 aa8.8□□□□□ -1
VPS36-201ENST00000378060 SCTRP47872 440 aa8.8□□□□□ -1
VPS36-201ENST00000378060 PTK7Q13308 1070 aa8.8□□□□□ -1
VPS36-201ENST00000378060 CNGA3Q16281 694 aa8.8□□□□□ -1
VPS36-201ENST00000378060 WDR72Q3MJ13 1102 aa8.8□□□□□ -1
VPS36-201ENST00000378060 SPOUT1Q5T280 376 aaKnown RBP8.8□□□□□ -1
VPS36-201ENST00000378060 C1orf228Q6PIY5 440 aa8.8□□□□□ -1
VPS36-201ENST00000378060 FEZF2Q8TBJ5 459 aa8.8□□□□□ -1
VPS36-201ENST00000378060 KRT35Q92764 455 aa8.8□□□□□ -1
VPS36-201ENST00000378060 WARS2Q9UGM6 360 aaKnown RBP8.8□□□□□ -1
VPS36-201ENST00000378060 GRID1Q9ULK0 1009 aa8.8□□□□□ -1
VPS36-201ENST00000378060 KCNN4O15554 427 aa8.79□□□□□ -1
VPS36-201ENST00000378060 HLA-DRAP01903 254 aa8.79□□□□□ -1
VPS36-201ENST00000378060 STIP1P31948 543 aaKnown RBP8.79□□□□□ -1
VPS36-201ENST00000378060 VHLP40337 213 aa8.79□□□□□ -1
VPS36-201ENST00000378060 MXD4Q14582 209 aaPredicted RBP8.79□□□□□ -1
VPS36-201ENST00000378060 DACT2Q5SW24 774 aa8.79□□□□□ -1
VPS36-201ENST00000378060 LVRNQ6Q4G3 990 aa8.79□□□□□ -1
VPS36-201ENST00000378060 PPIL6Q8IXY8 311 aa8.79□□□□□ -1
VPS36-201ENST00000378060 DTX3LQ8TDB6 740 aa8.79□□□□□ -1
VPS36-201ENST00000378060 MXRA8Q9BRK3 442 aa8.79□□□□□ -1
VPS36-201ENST00000378060 THAP2Q9H0W7 228 aa8.79□□□□□ -1
VPS36-201ENST00000378060 ALG13Q9NP73 1137 aaKnown RBP8.79□□□□□ -1
VPS36-201ENST00000378060 XPO7Q9UIA9 1087 aaKnown RBP8.79□□□□□ -1
VPS36-201ENST00000378060 CNOT7Q9UIV1 285 aaKnown RBP8.79□□□□□ -1
VPS36-201ENST00000378060 PSMD3O43242 534 aa8.79□□□□□ -1
VPS36-201ENST00000378060 GEMIN4P57678 1058 aaKnown RBP8.79□□□□□ -1
VPS36-201ENST00000378060 POU5F1BQ06416 359 aa8.79□□□□□ -1
VPS36-201ENST00000378060 PKN1Q16512 942 aa8.79□□□□□ -1
VPS36-201ENST00000378060 MEA1Q16626 185 aa8.79□□□□□ -1
VPS36-201ENST00000378060 FBXO25Q8TCJ0 367 aa8.79□□□□□ -1
VPS36-201ENST00000378060 TNIP3Q96KP6 325 aa8.79□□□□□ -1
VPS36-201ENST00000378060 IGSF9BQ9UPX0 1349 aa8.79□□□□□ -1
VPS36-201ENST00000378060 UBE2Q2LH0YL09 131 aa8.79□□□□□ -1
VPS36-201ENST00000378060 PJA2O43164 708 aa8.79□□□□□ -1
VPS36-201ENST00000378060 PSTPIP1O43586 416 aa8.79□□□□□ -1
VPS36-201ENST00000378060 WEE2P0C1S8 567 aa8.79□□□□□ -1
VPS36-201ENST00000378060 SLURP2P0DP57 97 aa8.79□□□□□ -1
VPS36-201ENST00000378060 TTLL4Q14679 1199 aa8.79□□□□□ -1
VPS36-201ENST00000378060 C9orf131Q5VYM1 1079 aa8.79□□□□□ -1
VPS36-201ENST00000378060 PRUNE1Q86TP1 453 aa8.79□□□□□ -1
VPS36-201ENST00000378060 PBXIP1Q96AQ6 731 aa8.79□□□□□ -1
VPS36-201ENST00000378060 MAGEB18Q96M61 343 aa8.79□□□□□ -1
VPS36-201ENST00000378060 ZNF560Q96MR9 790 aa8.79□□□□□ -1
VPS36-201ENST00000378060 MANSC1Q9H8J5 431 aa8.79□□□□□ -1
VPS36-201ENST00000378060 EML4Q9HC35 981 aaKnown RBP8.79□□□□□ -1
VPS36-201ENST00000378060 A8MXQ7 604 aa8.79□□□□□ -1
VPS36-201ENST00000378060 FOXN3O00409 490 aaPredicted RBP8.79□□□□□ -1
VPS36-201ENST00000378060 ZC3H11AO75152 810 aaKnown RBP eCLIP8.79□□□□□ -1
VPS36-201ENST00000378060 E2F6O75461 281 aa8.79□□□□□ -1
VPS36-201ENST00000378060 PRKCBP05771 671 aa8.79□□□□□ -1
VPS36-201ENST00000378060 GLI1P08151 1106 aa8.79□□□□□ -1
VPS36-201ENST00000378060 KRT4P19013 534 aa8.79□□□□□ -1
VPS36-201ENST00000378060 XPAP23025 273 aaPredicted RBP8.79□□□□□ -1
VPS36-201ENST00000378060 STAT5BP51692 787 aa8.79□□□□□ -1
VPS36-201ENST00000378060 ALDH18A1P54886 795 aaKnown RBP8.79□□□□□ -1
VPS36-201ENST00000378060 HDAC4P56524 1084 aa8.79□□□□□ -1
VPS36-201ENST00000378060 KIF2BQ8N4N8 673 aa8.79□□□□□ -1
VPS36-201ENST00000378060 THTPAQ9BU02 230 aa8.79□□□□□ -1
VPS36-201ENST00000378060 FAM49AQ9H0Q0 323 aaPredicted RBP8.79□□□□□ -1
VPS36-201ENST00000378060 VPS33BQ9H267 617 aa8.79□□□□□ -1
VPS36-201ENST00000378060 BAZ2AQ9UIF9 1905 aaKnown RBP8.78□□□□□ -1
VPS36-201ENST00000378060 E7ENQ6 273 aa8.78□□□□□ -1
VPS36-201ENST00000378060 SLC37A4O43826 429 aa8.78□□□□□ -1
VPS36-201ENST00000378060 CST8O60676 142 aa8.78□□□□□ -1
VPS36-201ENST00000378060 SNX2O60749 519 aa8.78□□□□□ -1
VPS36-201ENST00000378060 RALAP11233 206 aa8.78□□□□□ -1
VPS36-201ENST00000378060 GNAT1P11488 350 aa8.78□□□□□ -1
VPS36-201ENST00000378060 SPRP35270 261 aaPredicted RBP8.78□□□□□ -1
VPS36-201ENST00000378060 PTENP60484 403 aa8.78□□□□□ -1
VPS36-201ENST00000378060 SKOR1P84550 965 aa8.78□□□□□ -1
VPS36-201ENST00000378060 NFX1Q12986 1120 aaKnown RBP8.78□□□□□ -1
VPS36-201ENST00000378060 DNAJC3Q13217 504 aa8.78□□□□□ -1
VPS36-201ENST00000378060 FASTKD1Q53R41 847 aaKnown RBP8.78□□□□□ -1
VPS36-201ENST00000378060 EAPPQ56P03 285 aaPredicted RBP8.78□□□□□ -1
VPS36-201ENST00000378060 LMBRD2Q68DH5 695 aaPredicted RBP8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms