RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 PCSK1NQ9UHG2 260 aa14.52□□□□□ -0.09
CCDC88A-201ENST00000263630 ZNF804BA4D1E1 1349 aa14.52□□□□□ -0.09
CCDC88A-201ENST00000263630 PDS5AQ29RF7 1337 aaKnown RBP14.52□□□□□ -0.09
CCDC88A-201ENST00000263630 PABPC1P11940 636 aaKnown RBP14.52□□□□□ -0.09
CCDC88A-201ENST00000263630 CDC16Q13042 620 aa14.52□□□□□ -0.09
CCDC88A-201ENST00000263630 DUOXA2Q1HG44 320 aa14.52□□□□□ -0.09
CCDC88A-201ENST00000263630 LINC00523Q86TU6 105 aa14.52□□□□□ -0.09
CCDC88A-201ENST00000263630 PPP1R16BQ96T49 567 aa14.52□□□□□ -0.09
CCDC88A-201ENST00000263630 PRDM5Q9NQX1 630 aaPredicted RBP14.52□□□□□ -0.09
CCDC88A-201ENST00000263630 STK39Q9UEW8 545 aa14.52□□□□□ -0.09
CCDC88A-201ENST00000263630 HEATR9A2RTY3 570 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 NR3C1P04150 777 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 TCN1P20061 433 aaPredicted RBP14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 NSL1Q96IY1 281 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 MRC2Q9UBG0 1479 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 MTSS1O43312 755 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 KRT34O76011 436 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 LINC00854A0A1B0GVQ3 168 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 PADI6Q6TGC4 694 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 POMGNT2Q8NAT1 580 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 C3orf20Q8ND61 904 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 RASSF5Q8WWW0 418 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 ZNF624Q9P2J8 865 aaPredicted RBP14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 ABT1Q9ULW3 272 aaKnown RBP14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 KIF1BO60333 1816 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 NEURL1BA8MQ27 555 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 UBASH3BQ8TF42 649 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 COA7Q96BR5 231 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 RASA1P20936 1047 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 GPC1P35052 558 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 OTOAQ7RTW8 1153 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 SAMSN1Q9NSI8 373 aaKnown RBP14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 PAICSP22234 425 aaKnown RBP14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 CDC42EP1Q00587 391 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 RERGLQ9H628 205 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 DENND4BO75064 1496 aaPredicted RBP14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 IFNGR2P38484 337 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 KPNA1P52294 538 aaPredicted RBP14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 CAMK1Q14012 370 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 CCDC185Q8N715 623 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 PAGE5Q96GU1 130 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 STARP49675 285 aa14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 CACNB1Q02641 598 aaPredicted RBP14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 PIGHQ14442 188 aaPredicted RBP14.51□□□□□ -0.09
CCDC88A-201ENST00000263630 LRRC14BA6NHZ5 514 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 BCL10O95999 233 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 SFNP31947 248 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 ARF5P84085 180 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 PLIN5Q00G26 463 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 AKIRIN2Q53H80 203 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 POLG2Q9UHN1 485 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 A0A087X0T9 212 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 FTLP02792 175 aaPredicted RBP14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 ZNF23P17027 643 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 RFT1Q96AA3 541 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 PTPN1P18031 435 aaKnown RBP14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 MZF1P28698 734 aaPredicted RBP14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 KYNUQ16719 465 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 CLEC16AQ2KHT3 1053 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 TSPYL6Q8N831 410 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 FBXO40Q9UH90 709 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 MDH1P40925 334 aaKnown RBP14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 ULK3Q6PHR2 472 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 RACGAP1Q9H0H5 632 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 IL1RL2Q9HB29 575 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 TBC1D22BQ9NU19 505 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 RNF123Q5XPI4 1314 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 GCP02774 474 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 ERVK-10P10266 1014 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 MSH3P20585 1137 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 BAG6P46379 1132 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 AGAP9Q5VTM2 703 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 RDM1Q8NG50 284 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 UBN2Q6ZU65 1347 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 TOP2BQ02880 1626 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 BCAMP50895 628 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 TTLL4Q14679 1199 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 LRIG3Q6UXM1 1119 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 SNRNP27Q8WVK2 155 aaKnown RBP14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 GPR63Q9BZJ6 419 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 ZCWPW1Q9H0M4 648 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 KLHL28Q9NXS3 571 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 LGALS16A8MUM7 142 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 HOXC9P31274 260 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 RESTQ13127 1097 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 MZT2BQ6NZ67 158 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 BNIPLQ7Z465 357 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 MYO3BQ8WXR4 1341 aa14.5□□□□□ -0.09
CCDC88A-201ENST00000263630 RTN2O75298 545 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 UBTFL6P0CB48 400 aaPredicted RBP14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 STILQ15468 1287 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 TEX46H3BTG2 121 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 GFPT1Q06210 699 aaPredicted RBP14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 CRYMQ14894 314 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 WDR60Q8WVS4 1066 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 SLC39A10Q9ULF5 831 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 EFCAB10A6NFE3 127 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 SULT1E1P49888 294 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 RHAGQ02094 409 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 106.9 ms