RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 PPM1LQ5SGD2 360 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 ATAT1Q5SQI0 421 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 TPGS2Q68CL5 300 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 INTS8Q75QN2 995 aaKnown RBP13.99□□□□□ -0.17
CLK3-224ENST00000568605 ADHFE1Q8IWW8 467 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 THEM5Q8N1Q8 247 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 ZNF461Q8TAF7 563 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 SPATA18Q8TC71 538 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 SUSD6Q92537 303 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 ERCC4Q92889 916 aaPredicted RBP13.99□□□□□ -0.17
CLK3-224ENST00000568605 RHOBTB2Q9BYZ6 727 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 FBXL5Q9UKA1 691 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 MAN1B1Q9UKM7 699 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 MAFFQ9ULX9 164 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 NR2E1Q9Y466 385 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 PATJQ8NI35 1801 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 BICDL2A1A5D9 508 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 CETN3O15182 167 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 PHACTR2O75167 634 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 ZMYND10O75800 440 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 HNRNPA1P09651 372 aaKnown RBP eCLIP13.98□□□□□ -0.17
CLK3-224ENST00000568605 EPB41P11171 864 aaKnown RBP13.98□□□□□ -0.17
CLK3-224ENST00000568605 HOXA9P31269 272 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 SSTR3P32745 418 aaPredicted RBP13.98□□□□□ -0.17
CLK3-224ENST00000568605 PSMC2P35998 433 aaKnown RBP13.98□□□□□ -0.17
CLK3-224ENST00000568605 ARPP19P56211 112 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 ENPEPQ07075 957 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 ADAM9Q13443 819 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 BIRC3Q13489 604 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 TRPC3Q13507 836 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 UVSSAQ2YD98 709 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 ZCWPW2Q504Y3 356 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 LILRA6Q6PI73 481 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 TMC5Q6UXY8 1006 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 GPR149Q86SP6 731 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 FAM186BQ8IYM0 893 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 ADSSL1Q8N142 457 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 TMEM86AQ8N2M4 240 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 TMEM130Q8N3G9 435 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 OR5B17Q8NGF7 314 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 TMC2Q8TDI7 906 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 PARD3BQ8TEW8 1205 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 DHTKD1Q96HY7 919 aaPredicted RBP13.98□□□□□ -0.17
CLK3-224ENST00000568605 MKNK1Q9BUB5 465 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 PHF7Q9BWX1 381 aaPredicted RBP13.98□□□□□ -0.17
CLK3-224ENST00000568605 COL25A1Q9BXS0 654 aaPredicted RBP13.98□□□□□ -0.17
CLK3-224ENST00000568605 S1PR5Q9H228 398 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 PIDD1Q9HB75 910 aa13.98□□□□□ -0.17
CLK3-224ENST00000568605 HELZP42694 1942 aaKnown RBP13.98□□□□□ -0.17
CLK3-224ENST00000568605 C5orf42Q9H799 3197 aa13.97□□□□□ -0.17
CLK3-224ENST00000568605 BDP1A6H8Y1 2624 aa13.97□□□□□ -0.17
CLK3-224ENST00000568605 SPTBN5Q9NRC6 3674 aaKnown RBP13.97□□□□□ -0.17
CLK3-224ENST00000568605 WDR27A2RRH5 827 aa13.97□□□□□ -0.17
CLK3-224ENST00000568605 PRRG1O14668 218 aa13.97□□□□□ -0.17
CLK3-224ENST00000568605 SPTLC1O15269 473 aa13.97□□□□□ -0.17
CLK3-224ENST00000568605 XYLBO75191 536 aa13.97□□□□□ -0.17
CLK3-224ENST00000568605 SPATA31D3P0C874 917 aa13.97□□□□□ -0.17
CLK3-224ENST00000568605 MYL7Q01449 175 aa13.97□□□□□ -0.17
CLK3-224ENST00000568605 ZP2Q05996 745 aa13.97□□□□□ -0.17
CLK3-224ENST00000568605 CENPPQ6IPU0 288 aa13.97□□□□□ -0.17
CLK3-224ENST00000568605 SPATA31D4Q6ZUB0 917 aa13.97□□□□□ -0.17
CLK3-224ENST00000568605 TRAPPC11Q7Z392 1133 aa13.97□□□□□ -0.17
CLK3-224ENST00000568605 TOP6BLQ8N6T0 577 aa13.97□□□□□ -0.17
CLK3-224ENST00000568605 C12orf76Q8N812 135 aaPredicted RBP13.97□□□□□ -0.17
CLK3-224ENST00000568605 SLC7A14Q8TBB6 771 aa13.97□□□□□ -0.17
CLK3-224ENST00000568605 SMG7Q92540 1137 aaKnown RBP13.97□□□□□ -0.17
CLK3-224ENST00000568605 SYAP1Q96A49 352 aaPredicted RBP13.97□□□□□ -0.17
CLK3-224ENST00000568605 HPDLQ96IR7 371 aa13.97□□□□□ -0.17
CLK3-224ENST00000568605 IMPG2Q9BZV3 1241 aa13.97□□□□□ -0.17
CLK3-224ENST00000568605 NUP62CLQ9H1M0 184 aa13.97□□□□□ -0.17
CLK3-224ENST00000568605 GDAP2Q9NXN4 497 aa13.97□□□□□ -0.17
CLK3-224ENST00000568605 AFF4Q9UHB7 1163 aaKnown RBP13.97□□□□□ -0.17
CLK3-224ENST00000568605 SIX4Q9UIU6 781 aa13.97□□□□□ -0.17
CLK3-224ENST00000568605 TIMM13Q9Y5L4 95 aaPredicted RBP13.97□□□□□ -0.17
CLK3-224ENST00000568605 SNX9Q9Y5X1 595 aa13.97□□□□□ -0.17
CLK3-224ENST00000568605 CCDC195A0A1B0GUA6 201 aa13.96□□□□□ -0.17
CLK3-224ENST00000568605 LRRIQ3A6PVS8 624 aaPredicted RBP13.96□□□□□ -0.17
CLK3-224ENST00000568605 IKBKBO14920 756 aa13.96□□□□□ -0.17
CLK3-224ENST00000568605 SLC16A3O15427 465 aaKnown RBP13.96□□□□□ -0.17
CLK3-224ENST00000568605 ADAM12O43184 909 aa13.96□□□□□ -0.17
CLK3-224ENST00000568605 TBC1D4O60343 1298 aa13.96□□□□□ -0.17
CLK3-224ENST00000568605 STX10O60499 249 aa13.96□□□□□ -0.17
CLK3-224ENST00000568605 ABLIM3O94929 683 aa13.96□□□□□ -0.17
CLK3-224ENST00000568605 LRG1P02750 347 aa13.96□□□□□ -0.17
CLK3-224ENST00000568605 POU2F2P09086 479 aa13.96□□□□□ -0.17
CLK3-224ENST00000568605 ATF2P15336 505 aa13.96□□□□□ -0.17
CLK3-224ENST00000568605 CCNE1P24864 410 aa13.96□□□□□ -0.17
CLK3-224ENST00000568605 ATICP31939 592 aa13.96□□□□□ -0.17
CLK3-224ENST00000568605 CASP4P49662 377 aa13.96□□□□□ -0.17
CLK3-224ENST00000568605 TNNC1P63316 161 aa13.96□□□□□ -0.17
CLK3-224ENST00000568605 CLDN10P78369 228 aa13.96□□□□□ -0.17
CLK3-224ENST00000568605 FKBP3Q00688 224 aaKnown RBP13.96□□□□□ -0.17
CLK3-224ENST00000568605 TSPY1Q01534 308 aa13.96□□□□□ -0.17
CLK3-224ENST00000568605 PLD1Q13393 1074 aa13.96□□□□□ -0.17
CLK3-224ENST00000568605 MORC3Q14149 939 aa13.96□□□□□ -0.17
CLK3-224ENST00000568605 CAMK4Q16566 473 aa13.96□□□□□ -0.17
CLK3-224ENST00000568605 FOXR2Q6PJQ5 311 aa13.96□□□□□ -0.17
CLK3-224ENST00000568605 DPH6Q7L8W6 267 aa13.96□□□□□ -0.17
CLK3-224ENST00000568605 ELMOD1Q8N336 334 aa13.96□□□□□ -0.17
CLK3-224ENST00000568605 PRKD2Q9BZL6 878 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms