RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 SV2AQ7L0J3 742 aa9.94□□□□□ -0.82
VPS35-206ENST00000565228 NT5DC4Q86YG4 428 aa9.94□□□□□ -0.82
VPS35-206ENST00000565228 GPR65Q8IYL9 337 aa9.94□□□□□ -0.82
VPS35-206ENST00000565228 FAM122AQ96E09 287 aa9.94□□□□□ -0.82
VPS35-206ENST00000565228 TSPAN18Q96SJ8 248 aa9.94□□□□□ -0.82
VPS35-206ENST00000565228 CDCA3Q99618 268 aaPredicted RBP9.94□□□□□ -0.82
VPS35-206ENST00000565228 MRPL45Q9BRJ2 306 aaKnown RBP9.94□□□□□ -0.82
VPS35-206ENST00000565228 PI4K2AQ9BTU6 479 aa9.94□□□□□ -0.82
VPS35-206ENST00000565228 APOBEC3GQ9HC16 384 aaKnown RBP9.94□□□□□ -0.82
VPS35-206ENST00000565228 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.94□□□□□ -0.82
VPS35-206ENST00000565228 MAN1C1Q9NR34 630 aa9.94□□□□□ -0.82
VPS35-206ENST00000565228 FBXW11Q9UKB1 542 aa9.94□□□□□ -0.82
VPS35-206ENST00000565228 COG5Q9UP83 839 aa9.94□□□□□ -0.82
VPS35-206ENST00000565228 USP15Q9Y4E8 981 aaPredicted RBP9.94□□□□□ -0.82
VPS35-206ENST00000565228 NUB1Q9Y5A7 615 aa9.94□□□□□ -0.82
VPS35-206ENST00000565228 BACE2Q9Y5Z0 518 aa9.94□□□□□ -0.82
VPS35-206ENST00000565228 PIEZO1Q92508 2521 aa9.94□□□□□ -0.82
VPS35-206ENST00000565228 KPNA7A9QM74 516 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 CYB561D2O14569 222 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 GABRDO14764 452 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 N4BP1O75113 896 aaKnown RBP9.93□□□□□ -0.82
VPS35-206ENST00000565228 ATP2C2O75185 946 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 SOAT2O75908 522 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 KRT19P08727 400 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 TNNI1P19237 187 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 TYMPP19971 482 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 LMO2P25791 158 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 GCLMP48507 274 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 TAF6P49848 677 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 VAMP7P51809 220 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 NTHL1P78549 312 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 BFSP1Q12934 665 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 DUOXA2Q1HG44 320 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 CBWD6Q4V339 395 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 CBWD3Q5JTY5 395 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 CBWD5Q5RIA9 395 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 RARS2Q5T160 578 aaKnown RBP9.93□□□□□ -0.82
VPS35-206ENST00000565228 PTCRAQ6ISU1 281 aaPredicted RBP9.93□□□□□ -0.82
VPS35-206ENST00000565228 KIAA1841Q6NSI8 718 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 TMC5Q6UXY8 1006 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 DSTYKQ6XUX3 929 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 C11orf57Q6ZUT1 292 aaPredicted RBP9.93□□□□□ -0.82
VPS35-206ENST00000565228 FAM186BQ8IYM0 893 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 PDCL2Q8N4E4 241 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 LRRC52Q8N7C0 313 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 GOLGA5Q8TBA6 731 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 TMC2Q8TDI7 906 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 TAS1R2Q8TE23 839 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 ATXN2LQ8WWM7 1075 aaKnown RBP9.93□□□□□ -0.82
VPS35-206ENST00000565228 DHTKD1Q96HY7 919 aaPredicted RBP9.93□□□□□ -0.82
VPS35-206ENST00000565228 GBP4Q96PP9 640 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 NUP62CLQ9H1M0 184 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 KIAA1586Q9HCI6 787 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 RMND1Q9NWS8 449 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 CD207Q9UJ71 328 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 ITGA11Q9UKX5 1188 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 USP34Q70CQ2 3546 aa9.93□□□□□ -0.82
VPS35-206ENST00000565228 GREB1Q4ZG55 1949 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 CARNS1A5YM72 827 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 MAPK13O15264 365 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 HLA-DRAP01903 254 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 TMEM191BP0C7N4 346 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 ACAT1P24752 427 aaKnown RBP9.92□□□□□ -0.82
VPS35-206ENST00000565228 RAP1GAPP47736 663 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 CDH8P55286 799 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 ARPP19P56211 112 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 MRPS5P82675 430 aaKnown RBP9.92□□□□□ -0.82
VPS35-206ENST00000565228 RBP5P82980 135 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 ELAVL2Q12926 359 aaKnown RBP9.92□□□□□ -0.82
VPS35-206ENST00000565228 SMAD4Q13485 552 aaKnown RBP9.92□□□□□ -0.82
VPS35-206ENST00000565228 SMAD2Q15796 467 aaKnown RBP9.92□□□□□ -0.82
VPS35-206ENST00000565228 CTXN3Q4LDR2 81 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 OVOS1Q6IE37 1185 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 KREMEN2Q8NCW0 462 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 STKLD1Q8NE28 680 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 ST13P5Q8NFI4 369 aaPredicted RBP9.92□□□□□ -0.82
VPS35-206ENST00000565228 CASP10Q92851 521 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 SLC35C1Q96A29 364 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 CCDC47Q96A33 483 aaKnown RBP9.92□□□□□ -0.82
VPS35-206ENST00000565228 HPDLQ96IR7 371 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 ANKRD36BP1Q96IX9 119 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 PGLYRP2Q96PD5 576 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 EMILIN2Q9BXX0 1053 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 DPEP3Q9H4B8 488 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 POMKQ9H5K3 350 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 SMYD3Q9H7B4 428 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 CRTAC1Q9NQ79 661 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 TMEM30AQ9NV96 361 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 HCFC1R1Q9NWW0 138 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 GDAP2Q9NXN4 497 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 HMGXB4Q9UGU5 601 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 SNX9Q9Y5X1 595 aa9.92□□□□□ -0.82
VPS35-206ENST00000565228 MTMR11A4FU01 709 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 HAX1O00165 279 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 TNFRSF10AO00220 468 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 XPOTO43592 962 aaKnown RBP9.91□□□□□ -0.82
VPS35-206ENST00000565228 ZMYND10O75800 440 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 GLUD1P00367 558 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 ADH1AP07327 375 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 PSMC2P35998 433 aaKnown RBP9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 94.8 ms