RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 LLGL1Q15334 1064 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 PLEKHO2Q8TD55 490 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 KAT5Q92993 513 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 SLC35C1Q96A29 364 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 IMPG2Q9BZV3 1241 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 NUCKS1Q9H1E3 243 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 PDZD7Q9H5P4 517 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 PACSIN2Q9UNF0 486 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 COL1A2P08123 1366 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 A0A1B0GTH6 734 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 LACTBL1A8MY62 500 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 EXTL3O43909 919 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 CABYRO75952 493 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 RECQL4O94761 1208 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 NFICP08651 508 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 CKBP12277 381 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 MCM3P25205 808 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 FMO5P49326 533 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 NR1I3Q14994 352 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 ZKSCAN8Q15776 578 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 USP37Q86T82 979 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 NLRP14Q86W24 1093 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 LONP2Q86WA8 852 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 CNGA4Q8IV77 575 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 TSEN2Q8NCE0 465 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 DBF4BQ8NFT6 615 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 GAD1Q99259 594 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 NTPCRQ9BSD7 190 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 RNF225M0QZC1 329 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 DNM1LO00429 736 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 KRT86O43790 486 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 GPR32O75388 356 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 GFPT2O94808 682 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 TNNC2P02585 160 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 MLH1P40692 756 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 CRYBB1P53674 252 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 MXRA7P84157 204 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 CYP24A1Q07973 514 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 EPC2Q52LR7 807 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 WDR44Q5JSH3 913 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 MIIPQ5JXC2 388 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 OTOP2Q7RTS6 562 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 PHLDB2Q86SQ0 1253 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 SERINC5Q86VE9 423 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 TRIM59Q8IWR1 403 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 ABI1Q8IZP0 508 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 FAXDC2Q96IV6 333 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 ZNF333Q96JL9 665 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 UPF3AQ9H1J1 476 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 ACP6Q9NPH0 428 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 LRFN2Q9ULH4 789 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 SH3BP1Q9Y3L3 701 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 CASTOR2A6NHX0 329 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 ITGB3P05106 788 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 AFF1P51825 1210 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 BCAR1P56945 870 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 RTP1P59025 263 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 BMT2Q1RMZ1 405 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 JADE1Q6IE81 842 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 SV2AQ7L0J3 742 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 ZNF410Q86VK4 478 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 C7orf61Q8IZ16 206 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 CACNA2D3Q8IZS8 1091 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 DHX38Q92620 1227 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 PRCCQ92733 491 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 C18orf25Q96B23 403 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 ZIM3Q96PE6 472 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 ADAMTS10Q9H324 1103 aa9.24□□□□□ -0.93
LIMCH1-209ENST00000509277 A0A0B4J269 797 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 EVI5O60447 810 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 PBX3P40426 434 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 CKAP4Q07065 602 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 LRRC8DQ7L1W4 858 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 NECAB2Q7Z6G3 386 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 FRMD5Q7Z6J6 570 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 CCDC63Q8NA47 563 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 MDM1Q8TC05 714 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 ANKRD36BP1Q96IX9 119 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 CCDC42Q96M95 316 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 PAIP2Q9BPZ3 127 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 TMEM117Q9H0C3 514 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 FZD8Q9H461 694 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 TMEM134Q9H6X4 195 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 AGAP1Q9UPQ3 857 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 PRG3Q9Y2Y8 225 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 PTPRJQ12913 1337 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 MBLAC1A4D2B0 266 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 I3L4J1 428 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 MFAP3LO75121 409 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 MOCS3O95396 460 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 LDHAP00338 332 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 WEE2P0C1S8 567 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 CD19P15391 556 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 RAP1GAPP47736 663 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 WDR72Q3MJ13 1102 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 SLC27A1Q6PCB7 646 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 CYP26C1Q6V0L0 522 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 TMEM139Q8IV31 216 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 EHBP1Q8NDI1 1231 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 TATDN2Q93075 761 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms