RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 VPS53Q5VIR6 699 aa6.08□□□□□ -1.44
PTPN4-210ENST00000485247 MTHFD1LQ6UB35 978 aa6.08□□□□□ -1.44
PTPN4-210ENST00000485247 PARM1Q6UWI2 310 aa6.08□□□□□ -1.44
PTPN4-210ENST00000485247 TPRG1Q6ZUI0 275 aa6.08□□□□□ -1.44
PTPN4-210ENST00000485247 SND1Q7KZF4 910 aaKnown RBP eCLIP6.08□□□□□ -1.44
PTPN4-210ENST00000485247 FAM228AQ86W67 206 aa6.08□□□□□ -1.44
PTPN4-210ENST00000485247 ECHDC2Q86YB7 292 aa6.08□□□□□ -1.44
PTPN4-210ENST00000485247 SAMD3Q8N6K7 520 aa6.08□□□□□ -1.44
PTPN4-210ENST00000485247 RNF214Q8ND24 703 aa6.08□□□□□ -1.44
PTPN4-210ENST00000485247 BCL7CQ8WUZ0 217 aaPredicted RBP6.08□□□□□ -1.44
PTPN4-210ENST00000485247 FGF14Q92915 247 aa6.08□□□□□ -1.44
PTPN4-210ENST00000485247 CLDN23Q96B33 292 aa6.08□□□□□ -1.44
PTPN4-210ENST00000485247 IGSF21Q96ID5 467 aa6.08□□□□□ -1.44
PTPN4-210ENST00000485247 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.08□□□□□ -1.44
PTPN4-210ENST00000485247 IGF2RP11717 2491 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 LAMA4Q16363 1823 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 GALTP07902 379 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 SPATA31D3P0C874 917 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 KCNA2P16389 499 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 ZSCAN20P17040 1043 aaPredicted RBP6.07□□□□□ -1.44
PTPN4-210ENST00000485247 KLRC1P26715 233 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 RPS9P46781 194 aaKnown RBP6.07□□□□□ -1.44
PTPN4-210ENST00000485247 LIMK1P53667 647 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 HAND2P61296 217 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 HNRNPUQ00839 825 aaKnown RBP eCLIP6.07□□□□□ -1.44
PTPN4-210ENST00000485247 PPP2R5DQ14738 602 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 STPG1Q5TH74 334 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 PCNX4Q63HM2 1172 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 FAM43BQ6ZT52 329 aaPredicted RBP6.07□□□□□ -1.44
PTPN4-210ENST00000485247 SPATA31D4Q6ZUB0 917 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 NLRX1Q86UT6 975 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 DGKHQ86XP1 1220 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 HOMER1Q86YM7 354 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 KIAA0319LQ8IZA0 1049 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 FAM181AQ8N9Y4 354 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 GIMAP8Q8ND71 665 aaPredicted RBP6.07□□□□□ -1.44
PTPN4-210ENST00000485247 CMASQ8NFW8 434 aaPredicted RBP6.07□□□□□ -1.44
PTPN4-210ENST00000485247 PHKBQ93100 1093 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 NELL2Q99435 816 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 PCYT2Q99447 389 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 KRTAP4-12Q9BQ66 201 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 DUSP23Q9BVJ7 150 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 SCNM1Q9BWG6 230 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 LSM14BQ9BX40 385 aaKnown RBP6.07□□□□□ -1.44
PTPN4-210ENST00000485247 VN1R3Q9BXE9 311 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 MRPL9Q9BYD2 267 aaKnown RBP6.07□□□□□ -1.44
PTPN4-210ENST00000485247 LRRCC1Q9C099 1032 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 AZI2Q9H6S1 392 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 KAT14Q9H8E8 782 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 PCOLCE2Q9UKZ9 415 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 MYH6P13533 1939 aa6.07□□□□□ -1.44
PTPN4-210ENST00000485247 RALGAPA1Q6GYQ0 2036 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 FRMPD4Q14CM0 1322 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 ANKRD33BA6NCL7 494 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 ZBTB5O15062 677 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 PRPF40AO75400 957 aaKnown RBP6.06□□□□□ -1.44
PTPN4-210ENST00000485247 FGAP02671 866 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 GNA15P30679 374 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 NOVA1P51513 510 aaKnown RBP6.06□□□□□ -1.44
PTPN4-210ENST00000485247 CRYBB1P53674 252 aaPredicted RBP6.06□□□□□ -1.44
PTPN4-210ENST00000485247 AK2P54819 239 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 PFKPQ01813 784 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 ADCY1Q08828 1119 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 FZD5Q13467 585 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 LONRF3Q496Y0 759 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 C19orf48Q6RUI8 117 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 RSPO2Q6UXX9 243 aaPredicted RBP6.06□□□□□ -1.44
PTPN4-210ENST00000485247 CYP26C1Q6V0L0 522 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 ZNF852Q6ZMS4 543 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 MFSD6Q6ZSS7 791 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 C12orf40Q86WS4 652 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 PANK1Q8TE04 598 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 TNPO1Q92973 898 aaKnown RBP6.06□□□□□ -1.44
PTPN4-210ENST00000485247 ZNF707Q96C28 371 aaPredicted RBP6.06□□□□□ -1.44
PTPN4-210ENST00000485247 GPATCH3Q96I76 525 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 RHOBTB2Q9BYZ6 727 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 GBP3Q9H0R5 595 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 ARRDC1-AS1Q9H2J1 176 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 NRDE2Q9H7Z3 1164 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 ASH1LQ9NR48 2969 aaKnown RBP6.06□□□□□ -1.44
PTPN4-210ENST00000485247 MRPL17Q9NRX2 175 aaKnown RBP6.06□□□□□ -1.44
PTPN4-210ENST00000485247 ANKFY1Q9P2R3 1169 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 DPP7Q9UHL4 492 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 NDRG2Q9UN36 371 aaKnown RBP6.06□□□□□ -1.44
PTPN4-210ENST00000485247 WASF3Q9UPY6 502 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 SAMM50Q9Y512 469 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 DOCK8Q8NF50 2099 aa6.06□□□□□ -1.44
PTPN4-210ENST00000485247 A0A0U1RQF3 1178 aa6.05□□□□□ -1.44
PTPN4-210ENST00000485247 EIF4E1BA6NMX2 242 aaKnown RBP6.05□□□□□ -1.44
PTPN4-210ENST00000485247 CHURC1-FNTBB4DL54 471 aa6.05□□□□□ -1.44
PTPN4-210ENST00000485247 TEX28O15482 410 aa6.05□□□□□ -1.44
PTPN4-210ENST00000485247 GPR32O75388 356 aa6.05□□□□□ -1.44
PTPN4-210ENST00000485247 GLUD1P00367 558 aa6.05□□□□□ -1.44
PTPN4-210ENST00000485247 VTNP04004 478 aa6.05□□□□□ -1.44
PTPN4-210ENST00000485247 ITGB5P18084 799 aa6.05□□□□□ -1.44
PTPN4-210ENST00000485247 SLC11A1P49279 550 aa6.05□□□□□ -1.44
PTPN4-210ENST00000485247 FNTBP49356 437 aa6.05□□□□□ -1.44
PTPN4-210ENST00000485247 CCR3P51677 355 aa6.05□□□□□ -1.44
PTPN4-210ENST00000485247 STAT5BP51692 787 aa6.05□□□□□ -1.44
PTPN4-210ENST00000485247 RNASELQ05823 741 aaKnown RBP6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms