RNA–Protein interactions for RNA: ENST00000475639.5

U2AF1-209, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 1 (best)

Gene U2AF1, Length 4,694 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-209ENST00000475639 NNMTP40261 264 aa12.08□□□□□ -0.48
U2AF1-209ENST00000475639 NSUN2Q08J23 767 aaKnown RBP eCLIP12.08□□□□□ -0.48
U2AF1-209ENST00000475639 MXD4Q14582 209 aaPredicted RBP12.08□□□□□ -0.48
U2AF1-209ENST00000475639 UBE3CQ15386 1083 aa12.08□□□□□ -0.48
U2AF1-209ENST00000475639 ALX1Q15699 326 aa12.08□□□□□ -0.48
U2AF1-209ENST00000475639 TRIM71Q2Q1W2 868 aaKnown RBP12.08□□□□□ -0.48
U2AF1-209ENST00000475639 KLHL38Q2WGJ6 581 aa12.08□□□□□ -0.48
U2AF1-209ENST00000475639 CERKLQ49MI3 558 aaPredicted RBP12.08□□□□□ -0.48
U2AF1-209ENST00000475639 CEP78Q5JTW2 689 aa12.08□□□□□ -0.48
U2AF1-209ENST00000475639 ZNF713Q8N859 430 aaPredicted RBP12.08□□□□□ -0.48
U2AF1-209ENST00000475639 NRG4Q8WWG1 115 aa12.08□□□□□ -0.48
U2AF1-209ENST00000475639 TBC1D10AQ9BXI6 508 aa12.08□□□□□ -0.48
U2AF1-209ENST00000475639 PRPF3O43395 683 aaKnown RBP12.08□□□□□ -0.48
U2AF1-209ENST00000475639 KCNA2P16389 499 aa12.08□□□□□ -0.48
U2AF1-209ENST00000475639 EPHB2P29323 1055 aa12.08□□□□□ -0.48
U2AF1-209ENST00000475639 RCAN1P53805 252 aa12.08□□□□□ -0.48
U2AF1-209ENST00000475639 GTF2IP78347 998 aa12.08□□□□□ -0.48
U2AF1-209ENST00000475639 POU5F1BQ06416 359 aa12.08□□□□□ -0.48
U2AF1-209ENST00000475639 SLC10A5Q5PT55 438 aa12.08□□□□□ -0.48
U2AF1-209ENST00000475639 FAM83BQ5T0W9 1011 aa12.08□□□□□ -0.48
U2AF1-209ENST00000475639 DUPD1Q68J44 220 aa12.08□□□□□ -0.48
U2AF1-209ENST00000475639 DPP9Q86TI2 863 aa12.08□□□□□ -0.48
U2AF1-209ENST00000475639 PLD3Q8IV08 490 aa12.08□□□□□ -0.48
U2AF1-209ENST00000475639 AGGF1Q8N302 714 aaeCLIP12.08□□□□□ -0.48
U2AF1-209ENST00000475639 FBXO25Q8TCJ0 367 aa12.08□□□□□ -0.48
U2AF1-209ENST00000475639 BRIP1Q9BX63 1249 aa12.08□□□□□ -0.48
U2AF1-209ENST00000475639 AIPL1Q9NZN9 384 aa12.08□□□□□ -0.48
U2AF1-209ENST00000475639 MPP6Q9NZW5 540 aa12.08□□□□□ -0.48
U2AF1-209ENST00000475639 SEPT9Q9UHD8 586 aaPredicted RBP12.08□□□□□ -0.48
U2AF1-209ENST00000475639 CCNL1Q9UK58 526 aaPredicted RBP12.08□□□□□ -0.48
U2AF1-209ENST00000475639 SOX13Q9UN79 622 aa12.08□□□□□ -0.48
U2AF1-209ENST00000475639 USP20Q9Y2K6 914 aa12.08□□□□□ -0.48
U2AF1-209ENST00000475639 SLIT3O75094 1523 aa12.08□□□□□ -0.48
U2AF1-209ENST00000475639 RICTORQ6R327 1708 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 ADAMTS13Q76LX8 1427 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 NBNO60934 754 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 GH1P01241 217 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 PCP11498 1178 aaKnown RBP12.07□□□□□ -0.48
U2AF1-209ENST00000475639 ARPP19P56211 112 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 USP46P62068 366 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 ZDHHC24Q6UX98 284 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 BTNL9Q6UXG8 535 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 BBS7Q8IWZ6 715 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 ZNF496Q96IT1 587 aaPredicted RBP12.07□□□□□ -0.48
U2AF1-209ENST00000475639 EGFL8Q99944 293 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 TRIM9Q9C026 710 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 ZFYVE1Q9HBF4 777 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 EXOSC4Q9NPD3 245 aaKnown RBP12.07□□□□□ -0.48
U2AF1-209ENST00000475639 OLFML3Q9NRN5 406 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 TSC22D4Q9Y3Q8 395 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 TCRBV5S4A2TA0A5A2 114 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 TMEM120BA0PK00 339 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 VHLP40337 213 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 CAV1Q03135 178 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 CENPPQ6IPU0 288 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 TRAF7Q6Q0C0 670 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 TTC30BQ8N4P2 665 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 APPL2Q8NEU8 664 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 PLEKHA8Q96JA3 519 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 SPATA16Q9BXB7 569 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 TIAM2Q8IVF5 1701 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 ADCY3O60266 1144 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 RXRBP28702 533 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 SERPINB1P30740 379 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 CAPZA2P47755 286 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 ABCE1P61221 599 aaKnown RBP12.07□□□□□ -0.48
U2AF1-209ENST00000475639 VSTM1Q6UX27 236 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 SLC7A6OSQ96CW6 309 aaPredicted RBP12.07□□□□□ -0.48
U2AF1-209ENST00000475639 CEP170P1Q96L14 293 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 CARD9Q9H257 536 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 PARVBQ9HBI1 364 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 RHBDL2Q9NX52 303 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 M0R3G1 203 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 NFIBO00712 420 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 FAM200BP0CF97 657 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 HSPA1AP0DMV8 641 aaKnown RBP12.07□□□□□ -0.48
U2AF1-209ENST00000475639 HSPA1BP0DMV9 641 aaKnown RBP12.07□□□□□ -0.48
U2AF1-209ENST00000475639 COPB2P35606 906 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 WASHC2DQ5SRD0 308 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 LUZP2Q86TE4 346 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 MICU2Q8IYU8 434 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 FAM133AQ8N9E0 248 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 SH3KBP1Q96B97 665 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 ERP27Q96DN0 273 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 ACAP3Q96P50 834 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 PRPF18Q99633 342 aaKnown RBP12.07□□□□□ -0.48
U2AF1-209ENST00000475639 CDCA7Q9BWT1 371 aaPredicted RBP12.07□□□□□ -0.48
U2AF1-209ENST00000475639 DCLRE1BQ9H816 532 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 UBE2TQ9NPD8 197 aaPredicted RBP12.07□□□□□ -0.48
U2AF1-209ENST00000475639 CEP72Q9P209 647 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 TRAF3IP3Q9Y228 551 aa12.07□□□□□ -0.48
U2AF1-209ENST00000475639 SLC9A1P19634 815 aa12.06□□□□□ -0.48
U2AF1-209ENST00000475639 CLK1P49759 484 aaKnown RBP12.06□□□□□ -0.48
U2AF1-209ENST00000475639 KHDC1Q4VXA5 237 aaKnown RBP12.06□□□□□ -0.48
U2AF1-209ENST00000475639 SNX30Q5VWJ9 437 aa12.06□□□□□ -0.48
U2AF1-209ENST00000475639 CHMP1BQ7LBR1 199 aa12.06□□□□□ -0.48
U2AF1-209ENST00000475639 RASSF3Q86WH2 238 aa12.06□□□□□ -0.48
U2AF1-209ENST00000475639 RBM46Q8TBY0 533 aaKnown RBP12.06□□□□□ -0.48
U2AF1-209ENST00000475639 CKAP2Q8WWK9 683 aa12.06□□□□□ -0.48
U2AF1-209ENST00000475639 SYN2Q92777 582 aaPredicted RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms