RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 ZNF335Q9H4Z2 1342 aaPredicted RBP11.59□□□□□ -0.55
MSH6-201ENST00000234420 E7ENQ6 273 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 BTN3A3O00478 584 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 OPLAHO14841 1288 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 NFIL3Q16649 462 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 POTEAQ6S8J7 498 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 PRPF39Q86UA1 669 aaKnown RBP11.59□□□□□ -0.55
MSH6-201ENST00000234420 ACAP3Q96P50 834 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 TRIM54Q9BYV2 358 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 NDUFA13Q9P0J0 144 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 SYNGAP1Q96PV0 1343 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 ZBTB7BO15156 539 aaPredicted RBP11.59□□□□□ -0.55
MSH6-201ENST00000234420 RPS6KA5O75582 802 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 TYK2P29597 1187 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 NEK10Q6ZWH5 1172 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 CDHR1Q96JP9 859 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 PCDHB8Q9UN66 801 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 R3HDM2Q9Y2K5 976 aaKnown RBP11.59□□□□□ -0.55
MSH6-201ENST00000234420 NCOA1Q15788 1441 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 C5orf58C9J3I9 102 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 F8VZ95 297 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 TEX33O43247 280 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 PSTPIP1O43586 416 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 MFAP3LO75121 409 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 CKBP12277 381 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 C21orf59P57076 290 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 ZNF658Q5TYW1 1059 aaPredicted RBP11.59□□□□□ -0.55
MSH6-201ENST00000234420 DDX50Q9BQ39 737 aaKnown RBP11.59□□□□□ -0.55
MSH6-201ENST00000234420 STON1Q9Y6Q2 735 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 NSD2O96028 1365 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 STX7O15400 261 aaKnown RBP11.59□□□□□ -0.55
MSH6-201ENST00000234420 PRKAB2O43741 272 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 PDHBP11177 359 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 ALOX12P18054 663 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 PDCD10Q9BUL8 212 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 GOLPH3LQ9H4A5 285 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 TOPORSQ9NS56 1045 aaPredicted RBP11.59□□□□□ -0.55
MSH6-201ENST00000234420 GABBR1Q9UBS5 961 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 HSMCR30P0CW71 290 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 TXNP10599 105 aaKnown RBP11.59□□□□□ -0.55
MSH6-201ENST00000234420 SULT1E1P49888 294 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 PPIDQ08752 370 aaKnown RBP11.59□□□□□ -0.55
MSH6-201ENST00000234420 CDC16Q13042 620 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 PPP4R3CPQ6ZMV5 832 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 ZNF438Q7Z4V0 828 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 SGSM3Q96HU1 749 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 RANBP17Q9H2T7 1088 aaKnown RBP11.59□□□□□ -0.55
MSH6-201ENST00000234420 TUT1Q9H6E5 874 aaKnown RBP11.59□□□□□ -0.55
MSH6-201ENST00000234420 POLR1BQ9H9Y6 1135 aa11.59□□□□□ -0.55
MSH6-201ENST00000234420 KAT6AQ92794 2004 aa11.58□□□□□ -0.55
MSH6-201ENST00000234420 TCEA1P23193 301 aaKnown RBP11.58□□□□□ -0.56
MSH6-201ENST00000234420 SNAPC2Q13487 334 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.58□□□□□ -0.562e-7■■■■□ 25.1
MSH6-201ENST00000234420 ZCCHC7Q8N3Z6 543 aaKnown RBP11.58□□□□□ -0.56
MSH6-201ENST00000234420 CARNMT1Q8N4J0 409 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 EXD1Q8NHP7 514 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 PKP3Q9Y446 797 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 USP19O94966 1318 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 TRIM43BA6NCK2 446 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 USP17L10C9JJH3 530 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 CYP27B1O15528 508 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 NFICP08651 508 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 ZNF667Q5HYK9 610 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 C6orf62Q9GZU0 229 aaPredicted RBP11.58□□□□□ -0.56
MSH6-201ENST00000234420 KDM4CQ9H3R0 1056 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 ANAPC7Q9UJX3 599 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 SLC39A10Q9ULF5 831 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 KIAA0232Q92628 1395 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 IQCMA0A1B0GVH7 501 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 SLC16A4O15374 487 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 PDZK1Q5T2W1 519 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 CIPCQ9C0C6 399 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 TRABDQ9H4I3 376 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 ZBTB1Q9Y2K1 713 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 PDE9AO76083 593 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 FAM107AO95990 144 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 EIF2S1P05198 315 aaKnown RBP11.58□□□□□ -0.56
MSH6-201ENST00000234420 HMOX2P30519 316 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 SCNN1AP37088 669 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 CAV1Q03135 178 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 RNF19BQ6ZMZ0 732 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 POMGNT2Q8NAT1 580 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 KLHL11Q9NVR0 708 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 ITGB1BP2Q9UKP3 347 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 LEMD3Q9Y2U8 911 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 LOC100653049A0A140TA62 436 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 A8MX80 341 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 KRT33AO76009 404 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 KRT34O76011 436 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 BCL10O95999 233 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 BCAP31P51572 246 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 MARSP56192 900 aaKnown RBP11.58□□□□□ -0.56
MSH6-201ENST00000234420 GFPT1Q06210 699 aaPredicted RBP11.58□□□□□ -0.56
MSH6-201ENST00000234420 ASPRV1Q53RT3 343 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 DDI2Q5TDH0 399 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 CENPPQ6IPU0 288 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 PGBD2Q6P3X8 592 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 POTEEQ6S8J3 1075 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 KLHL24Q6TFL4 600 aa11.58□□□□□ -0.56
MSH6-201ENST00000234420 SYTL1Q8IYJ3 562 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms