RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSM4	YIL030C	PAU1	P0CE88	120 aa		3.04	□□□□□ -1.92
SSM4	YIL030C	PAU14	P0CE89	120 aa		3.04	□□□□□ -1.92
SSM4	YIL030C	PAU6	P0CE90	120 aa		3.04	□□□□□ -1.92
SSM4	YIL030C	PAU18	P0CE91	120 aa		3.04	□□□□□ -1.92
SSM4	YIL030C	PAU8	P0CE92	120 aa		3.04	□□□□□ -1.92
SSM4	YIL030C	PAU11	P0CE93	120 aa		3.04	□□□□□ -1.92
SSM4	YIL030C	DAT1	P13483	248 aa	Known RBP	3.04	□□□□□ -1.92
SSM4	YIL030C	DAL82	P21705	255 aa		3.04	□□□□□ -1.92
SSM4	YIL030C	URK1	P27515	501 aa		3.04	□□□□□ -1.92
SSM4	YIL030C	OCH1	P31755	480 aa		3.04	□□□□□ -1.92
SSM4	YIL030C	PAU13	P38725	120 aa		3.04	□□□□□ -1.92
SSM4	YIL030C	RTC3	P38804	111 aa	Predicted RBP	3.04	□□□□□ -1.92
SSM4	YIL030C	RPS26A	P39938	119 aa	Known RBP	3.04	□□□□□ -1.92
SSM4	YIL030C	YNR066C	P53752	436 aa		3.04	□□□□□ -1.92
SSM4	YIL030C	SNP1	Q00916	300 aa	Predicted RBP	3.04	□□□□□ -1.92
SSM4	YIL030C	PAU10	Q03050	120 aa		3.04	□□□□□ -1.92
SSM4	YIL030C	YOL029C	Q08187	201 aa		3.04	□□□□□ -1.92
SSM4	YIL030C	PAU20	Q08322	120 aa		3.04	□□□□□ -1.92
SSM4	YIL030C	MPD1	Q12404	318 aa	Known RBP	3.04	□□□□□ -1.92
SSM4	YIL030C	PAU9	Q3E770	120 aa		3.04	□□□□□ -1.92
SSM4	YIL030C	YHR214C-E	Q8TGK0	99 aa		3.04	□□□□□ -1.92
SSM4	YIL030C	HIS5	P07172	385 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	ERS1	P17261	260 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	CPT1	P17898	393 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	YBL059W	P34224	193 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	SRP102	P36057	244 aa	Predicted RBP	3.03	□□□□□ -1.92
SSM4	YIL030C	CMC1	P36064	111 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	FRM2	P37261	193 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	TRM7	P38238	310 aa	Known RBP	3.03	□□□□□ -1.92
SSM4	YIL030C	PEX7	P39108	375 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	RTS2	P40962	232 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	HIT1	P46973	164 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	DUG3	P53871	357 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	LRS4	Q04087	347 aa	Known RBP	3.03	□□□□□ -1.92
SSM4	YIL030C	HMRA1	P0CY11	126 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	IDH2	P28241	369 aa	Known RBP	3.03	□□□□□ -1.92
SSM4	YIL030C	YGL015C	P33199	130 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	SSS1	P35179	80 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	PRS4	P38063	326 aa	Predicted RBP	3.03	□□□□□ -1.92
SSM4	YIL030C	MIX23	P38162	196 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	YMR262W	P38430	313 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	MRPL19	P53875	158 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	YJR112W-A	Q3E743	109 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	POR1	P04840	283 aa	Known RBP	3.03	□□□□□ -1.92
SSM4	YIL030C	NNK1	P36003	928 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	VPS51	P36116	164 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	GLE2	P40066	365 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	FMP10	P40098	244 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	YNL208W	P40159	199 aa	Known RBP	3.03	□□□□□ -1.92
SSM4	YIL030C	VPS28	Q02767	242 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	TRS23	Q03784	219 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	YDR444W	Q04093	687 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	HRD1	Q08109	551 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	YCR024C-B	Q3E7Z8	88 aa		3.03	□□□□□ -1.92
SSM4	YIL030C	MIA40	P36046	403 aa		3.02	□□□□□ -1.93
SSM4	YIL030C	YKR073C	P36153	106 aa		3.02	□□□□□ -1.93
SSM4	YIL030C	QDR3	P38227	689 aa		3.02	□□□□□ -1.93
SSM4	YIL030C	ECM34	P38728	170 aa		3.02	□□□□□ -1.93
SSM4	YIL030C	SDP1	P40479	209 aa		3.02	□□□□□ -1.93
SSM4	YIL030C	YGL230C	P53074	147 aa		3.02	□□□□□ -1.93
SSM4	YIL030C	CTF19	Q02732	369 aa		3.02	□□□□□ -1.93
SSM4	YIL030C	YRA1	Q12159	226 aa	Known RBP	3.02	□□□□□ -1.93
SSM4	YIL030C	POM33	Q12164	279 aa		3.02	□□□□□ -1.93
SSM4	YIL030C	COX10	P21592	462 aa		3.02	□□□□□ -1.93
SSM4	YIL030C	TEM1	P38987	245 aa		3.02	□□□□□ -1.93
SSM4	YIL030C	STD1	Q02794	444 aa		3.02	□□□□□ -1.93
SSM4	YIL030C	YML096W	Q04489	525 aa		3.02	□□□□□ -1.93
SSM4	YIL030C	ALK2	P32789	676 aa	Predicted RBP	3.02	□□□□□ -1.93
SSM4	YIL030C	OYE3	P41816	400 aa	Predicted RBP	3.02	□□□□□ -1.93
SSM4	YIL030C	RSM7	P47150	247 aa		3.02	□□□□□ -1.93
SSM4	YIL030C	NUP42	P49686	430 aa	Known RBP	3.02	□□□□□ -1.93
SSM4	YIL030C	COG7	P53195	279 aa		3.02	□□□□□ -1.93
SSM4	YIL030C	RRT7	Q07829	113 aa		3.02	□□□□□ -1.93
SSM4	YIL030C	FIT3	Q08907	204 aa		3.02	□□□□□ -1.93
SSM4	YIL030C	YOR114W	Q12219	294 aa		3.02	□□□□□ -1.93
SSM4	YIL030C	SEC11	P15367	167 aa		3.02	□□□□□ -1.93
SSM4	YIL030C	PDX1	P16451	410 aa		3.02	□□□□□ -1.93
SSM4	YIL030C	EHT1	P38295	451 aa		3.02	□□□□□ -1.93
SSM4	YIL030C	NSA2	P40078	261 aa	Known RBP	3.02	□□□□□ -1.93
SSM4	YIL030C	YJL016W	P47072	561 aa		3.02	□□□□□ -1.93
SSM4	YIL030C	MIC27	P50945	234 aa		3.02	□□□□□ -1.93
SSM4	YIL030C	HRI1	Q05905	244 aa	Known RBP	3.02	□□□□□ -1.93
SSM4	YIL030C	MRP49	P32388	137 aa		3.01	□□□□□ -1.93
SSM4	YIL030C	YBR184W	P38299	523 aa		3.01	□□□□□ -1.93
SSM4	YIL030C	PGU1	P47180	361 aa		3.01	□□□□□ -1.93
SSM4	YIL030C	MGR2	Q02889	113 aa		3.01	□□□□□ -1.93
SSM4	YIL030C	ADD37	Q03233	198 aa		3.01	□□□□□ -1.93
SSM4	YIL030C	IZH3	Q07959	543 aa		3.01	□□□□□ -1.93
SSM4	YIL030C	THI72	Q08579	599 aa		3.01	□□□□□ -1.93
SSM4	YIL030C	RAD23	P32628	398 aa	Known RBP	3.01	□□□□□ -1.93
SSM4	YIL030C	ELO1	P39540	310 aa		3.01	□□□□□ -1.93
SSM4	YIL030C	UIP3	P39547	235 aa		3.01	□□□□□ -1.93
SSM4	YIL030C	SEC24	P40482	926 aa	Known RBP	3.01	□□□□□ -1.93
SSM4	YIL030C	ALG12	P53730	551 aa		3.01	□□□□□ -1.93
SSM4	YIL030C	BOR1	P53838	576 aa		3.01	□□□□□ -1.93
SSM4	YIL030C	YDL129W	Q07555	291 aa		3.01	□□□□□ -1.93
SSM4	YIL030C	COX1	P00401	534 aa		3.01	□□□□□ -1.93
SSM4	YIL030C	DUT1	P33317	147 aa		3.01	□□□□□ -1.93
SSM4	YIL030C	YNK1	P36010	153 aa	Known RBP	3.01	□□□□□ -1.93
SSM4	YIL030C	AQR1	P53943	586 aa		3.01	□□□□□ -1.93

Retrieved 100 of 5,963 RNA–protein pairs in 35.8 ms