RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 IGFLR1Q9H665 355 aa21.9■■□□□ 1.1
PTCD3-220ENST00000627371 FNIP2Q9P278 1114 aa21.9■■□□□ 1.1
PTCD3-220ENST00000627371 PCDHB8Q9UN66 801 aa21.9■■□□□ 1.1
PTCD3-220ENST00000627371 AGAP1Q9UPQ3 857 aa21.9■■□□□ 1.1
PTCD3-220ENST00000627371 CLASP2O75122 1294 aaKnown RBP21.89■■□□□ 1.09
PTCD3-220ENST00000627371 SLC34A2O95436 690 aa21.89■■□□□ 1.09
PTCD3-220ENST00000627371 KRT19P08727 400 aa21.89■■□□□ 1.09
PTCD3-220ENST00000627371 KRT13P13646 458 aa21.89■■□□□ 1.09
PTCD3-220ENST00000627371 VAMP7P51809 220 aa21.89■■□□□ 1.09
PTCD3-220ENST00000627371 STX17P56962 302 aa21.89■■□□□ 1.09
PTCD3-220ENST00000627371 MCCD1P59942 119 aaPredicted RBP21.89■■□□□ 1.09
PTCD3-220ENST00000627371 DLG4P78352 724 aa21.89■■□□□ 1.09
PTCD3-220ENST00000627371 BFSP1Q12934 665 aa21.89■■□□□ 1.09
PTCD3-220ENST00000627371 PSMD5Q16401 504 aa21.89■■□□□ 1.09
PTCD3-220ENST00000627371 CTC1Q2NKJ3 1217 aa21.89■■□□□ 1.09
PTCD3-220ENST00000627371 DPCR1Q3MIW9 517 aa21.89■■□□□ 1.09
PTCD3-220ENST00000627371 SV2CQ496J9 727 aa21.89■■□□□ 1.09
PTCD3-220ENST00000627371 PRSS55Q6UWB4 352 aaPredicted RBP21.89■■□□□ 1.09
PTCD3-220ENST00000627371 DSTYKQ6XUX3 929 aa21.89■■□□□ 1.09
PTCD3-220ENST00000627371 BORCS6Q96GS4 357 aa21.89■■□□□ 1.09
PTCD3-220ENST00000627371 CEP63Q96MT8 703 aa21.89■■□□□ 1.09
PTCD3-220ENST00000627371 RWDD2AQ9UIY3 292 aa21.89■■□□□ 1.09
PTCD3-220ENST00000627371 IKBKBO14920 756 aa21.88■■□□□ 1.09
PTCD3-220ENST00000627371 TEX28O15482 410 aa21.88■■□□□ 1.09
PTCD3-220ENST00000627371 ADH1AP07327 375 aa21.88■■□□□ 1.09
PTCD3-220ENST00000627371 KCNC3Q14003 757 aa21.88■■□□□ 1.09
PTCD3-220ENST00000627371 VARS2Q5ST30 1063 aaKnown RBP21.88■■□□□ 1.09
PTCD3-220ENST00000627371 C1orf220Q5T0J3 134 aa21.88■■□□□ 1.09
PTCD3-220ENST00000627371 SCARA3Q6AZY7 606 aa21.88■■□□□ 1.09
PTCD3-220ENST00000627371 ANKS3Q6ZW76 656 aa21.88■■□□□ 1.09
PTCD3-220ENST00000627371 APPL2Q8NEU8 664 aa21.88■■□□□ 1.09
PTCD3-220ENST00000627371 SENP8Q96LD8 212 aa21.88■■□□□ 1.09
PTCD3-220ENST00000627371 TMEM63CQ9P1W3 806 aa21.88■■□□□ 1.09
PTCD3-220ENST00000627371 MTRRQ9UBK8 725 aa21.88■■□□□ 1.09
PTCD3-220ENST00000627371 DACH1Q9UI36 760 aa21.88■■□□□ 1.09
PTCD3-220ENST00000627371 R3HCC1Q9Y3T6 440 aaKnown RBP21.88■■□□□ 1.09
PTCD3-220ENST00000627371 ARHGEF37A1IGU5 675 aa21.87■■□□□ 1.09
PTCD3-220ENST00000627371 KPNA7A9QM74 516 aa21.87■■□□□ 1.09
PTCD3-220ENST00000627371 LINC01565O15544 149 aa21.87■■□□□ 1.09
PTCD3-220ENST00000627371 GLP2RO95838 553 aa21.87■■□□□ 1.09
PTCD3-220ENST00000627371 TYMPP19971 482 aa21.87■■□□□ 1.09
PTCD3-220ENST00000627371 NDUFV1P49821 464 aa21.87■■□□□ 1.09
PTCD3-220ENST00000627371 ADAM15Q13444 863 aa21.87■■□□□ 1.09
PTCD3-220ENST00000627371 TDRD10Q5VZ19 366 aaKnown RBP21.87■■□□□ 1.09
PTCD3-220ENST00000627371 PPFIBP1Q86W92 1011 aa21.87■■□□□ 1.09
PTCD3-220ENST00000627371 CLDND1Q9NY35 253 aa21.87■■□□□ 1.09
PTCD3-220ENST00000627371 COG5Q9UP83 839 aa21.87■■□□□ 1.09
PTCD3-220ENST00000627371 BACE2Q9Y5Z0 518 aa21.87■■□□□ 1.09
PTCD3-220ENST00000627371 HCFC2Q9Y5Z7 792 aa21.87■■□□□ 1.09
PTCD3-220ENST00000627371 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.86■■□□□ 1.09
PTCD3-220ENST00000627371 C4BPAP04003 597 aaKnown RBP21.86■■□□□ 1.09
PTCD3-220ENST00000627371 TRIM49P0CI25 452 aa21.86■■□□□ 1.09
PTCD3-220ENST00000627371 TRIM49CP0CI26 452 aa21.86■■□□□ 1.09
PTCD3-220ENST00000627371 ODC1P11926 461 aa21.86■■□□□ 1.09
PTCD3-220ENST00000627371 RPL17P18621 184 aaKnown RBP21.86■■□□□ 1.09
PTCD3-220ENST00000627371 KLRC2P26717 231 aa21.86■■□□□ 1.09
PTCD3-220ENST00000627371 CLCN4P51793 760 aa21.86■■□□□ 1.09
PTCD3-220ENST00000627371 MYO1EQ12965 1108 aa21.86■■□□□ 1.09
PTCD3-220ENST00000627371 MRPL58Q14197 206 aaKnown RBP21.86■■□□□ 1.09
PTCD3-220ENST00000627371 KLHL40Q2TBA0 621 aa21.86■■□□□ 1.09
PTCD3-220ENST00000627371 TMEM184AQ6ZMB5 413 aa21.86■■□□□ 1.09
PTCD3-220ENST00000627371 FILIP1Q7Z7B0 1213 aa21.86■■□□□ 1.09
PTCD3-220ENST00000627371 VN1R2Q8NFZ6 395 aa21.86■■□□□ 1.09
PTCD3-220ENST00000627371 HLA-CQ95604 372 aa21.86■■□□□ 1.09
PTCD3-220ENST00000627371 SYAP1Q96A49 352 aaPredicted RBP21.86■■□□□ 1.09
PTCD3-220ENST00000627371 UBE2ZQ9H832 354 aaPredicted RBP21.86■■□□□ 1.09
PTCD3-220ENST00000627371 PRDM6Q9NQX0 595 aa21.86■■□□□ 1.09
PTCD3-220ENST00000627371 H7C4K7 107 aa21.85■■□□□ 1.09
PTCD3-220ENST00000627371 TBX10O75333 385 aa21.85■■□□□ 1.09
PTCD3-220ENST00000627371 CST3P01034 146 aaPredicted RBP21.85■■□□□ 1.09
PTCD3-220ENST00000627371 CYP11A1P05108 521 aa21.85■■□□□ 1.09
PTCD3-220ENST00000627371 YWHAHQ04917 246 aaPredicted RBP21.85■■□□□ 1.09
PTCD3-220ENST00000627371 BIRC3Q13489 604 aa21.85■■□□□ 1.09
PTCD3-220ENST00000627371 ZACNQ401N2 412 aa21.85■■□□□ 1.09
PTCD3-220ENST00000627371 CAVIN1Q6NZI2 390 aaKnown RBP21.85■■□□□ 1.09
PTCD3-220ENST00000627371 C15orf39Q6ZRI6 1047 aa21.85■■□□□ 1.09
PTCD3-220ENST00000627371 SLC22A17Q8WUG5 538 aa21.85■■□□□ 1.09
PTCD3-220ENST00000627371 HPDLQ96IR7 371 aa21.85■■□□□ 1.09
PTCD3-220ENST00000627371 MED15Q96RN5 788 aa21.85■■□□□ 1.09
PTCD3-220ENST00000627371 CLSTN3Q9BQT9 956 aa21.85■■□□□ 1.09
PTCD3-220ENST00000627371 GDAP2Q9NXN4 497 aa21.85■■□□□ 1.09
PTCD3-220ENST00000627371 DSEQ9UL01 958 aa21.85■■□□□ 1.09
PTCD3-220ENST00000627371 TIMM13Q9Y5L4 95 aaPredicted RBP21.85■■□□□ 1.09
PTCD3-220ENST00000627371 UNC80Q8N2C7 3258 aa21.84■■□□□ 1.09
PTCD3-220ENST00000627371 CYB561D2O14569 222 aa21.84■■□□□ 1.09
PTCD3-220ENST00000627371 TBC1D4O60343 1298 aa21.84■■□□□ 1.09
PTCD3-220ENST00000627371 PHACTR2O75167 634 aa21.84■■□□□ 1.09
PTCD3-220ENST00000627371 OAZ2O95190 189 aa21.84■■□□□ 1.09
PTCD3-220ENST00000627371 C1RP00736 705 aa21.84■■□□□ 1.09
PTCD3-220ENST00000627371 SRGAP2BP0DMP2 458 aa21.84■■□□□ 1.09
PTCD3-220ENST00000627371 ERCC5P28715 1186 aaPredicted RBP21.84■■□□□ 1.09
PTCD3-220ENST00000627371 LTBRP36941 435 aa21.84■■□□□ 1.09
PTCD3-220ENST00000627371 RBM10P98175 930 aaKnown RBP21.84■■□□□ 1.09
PTCD3-220ENST00000627371 PPP3CAQ08209 521 aa21.84■■□□□ 1.09
PTCD3-220ENST00000627371 TRPC3Q13507 836 aa21.84■■□□□ 1.09
PTCD3-220ENST00000627371 CT47A1Q5JQC4 288 aaPredicted RBP21.84■■□□□ 1.09
PTCD3-220ENST00000627371 ZNF280DQ6N043 979 aa21.84■■□□□ 1.09
PTCD3-220ENST00000627371 LLGL2Q6P1M3 1020 aa21.84■■□□□ 1.09
PTCD3-220ENST00000627371 SASS6Q6UVJ0 657 aa21.84■■□□□ 1.09
PTCD3-220ENST00000627371 SV2AQ7L0J3 742 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms