RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 IPPQ9Y573 584 aa4.7□□□□□ -1.66
CKS1BP3-201ENST00000600888 ABCC6O95255 1503 aa4.7□□□□□ -1.66
CKS1BP3-201ENST00000600888 LTN1O94822 1766 aa4.7□□□□□ -1.66
CKS1BP3-201ENST00000600888 CAMTA1Q9Y6Y1 1673 aa4.7□□□□□ -1.66
CKS1BP3-201ENST00000600888 SBF2Q86WG5 1849 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 KIAA0232Q92628 1395 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 KLRG2A4D1S0 409 aaPredicted RBP4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 GOLGA6L6A8MZA4 724 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 PRR5-ARHGAP8B1AHC4 643 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 B5MCH6 92 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 HTRA2O43464 458 aaPredicted RBP4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 ZRANB2O95218 330 aaKnown RBP eCLIP4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 ALOX15P16050 662 aaPredicted RBP4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 CRHR2Q13324 411 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 SP140Q13342 867 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 CNGB1Q14028 1251 aaPredicted RBP4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 TTF1Q15361 905 aaPredicted RBP4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 CSRP2Q16527 193 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 BMT2Q1RMZ1 405 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 ZXDCQ2QGD7 858 aaPredicted RBP4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 DCAF17Q5H9S7 520 aaPredicted RBP4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 NAIF1Q69YI7 327 aaPredicted RBP4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 TMPRSS6Q8IU80 811 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 RHOT1Q8IXI2 618 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 ANKRD13AQ8IZ07 590 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 CPA6Q8N4T0 437 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 IL17DQ8TAD2 202 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 SLC35B2Q8TB61 432 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 CCHCR1Q8TD31 782 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 HDAC10Q969S8 669 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 PGBD4Q96DM1 585 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 HOOK2Q96ED9 719 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 SENP6Q9GZR1 1112 aaPredicted RBP4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 MANSC1Q9H8J5 431 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 SPON1Q9HCB6 807 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 AASDHPPTQ9NRN7 309 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 LANCL2Q9NS86 450 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 MOCS1Q9NZB8 636 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 SERPINB13Q9UIV8 391 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 AJAP1Q9UKB5 411 aaPredicted RBP4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 CLCA2Q9UQC9 943 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 MYRFQ9Y2G1 1151 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 LUC7L2Q9Y383 392 aaKnown RBP4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 PCDHA13Q9Y5I0 950 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 SPATA31A5Q5VU36 1347 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 SPATA31A7Q8IWB4 1347 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 TTC21AQ8NDW8 1320 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 TNS1Q9HBL0 1735 aaKnown RBP4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 CD163L1Q9NR16 1453 aa4.69□□□□□ -1.66
CKS1BP3-201ENST00000600888 NINLQ9Y2I6 1382 aa4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 FAM208AQ9UK61 1670 aaKnown RBP4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 CCDC154A6NI56 674 aa4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 CXorf49A8MYA2 514 aaPredicted RBP4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 PJA2O43164 708 aa4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 GCP02774 474 aa4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 AMY1AP04745 511 aa4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 PTH1RQ03431 593 aa4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 MCL1Q07820 350 aa4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 NRN1LQ496H8 165 aa4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 TMEM240Q5SV17 173 aa4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 AFMIDQ63HM1 303 aa4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 RNF207Q6ZRF8 634 aa4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 MIGA2Q7L4E1 593 aa4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 CMTR2Q8IYT2 770 aaKnown RBP4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 MIER2Q8N344 545 aa4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 CASKIN2Q8WXE0 1202 aa4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 TESK2Q96S53 571 aa4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 ZNF703Q9H7S9 590 aaPredicted RBP4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 TCF7L1Q9HCS4 588 aa4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 PRDM11Q9NQV5 511 aa4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 TMEM140Q9NV12 185 aa4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 BLMP54132 1417 aaPredicted RBP4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 SPATA31A1Q5TZJ5 1347 aa4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 TTC21BQ7Z4L5 1316 aa4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 MYBBP1AQ9BQG0 1328 aaKnown RBP4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 COL5A2P05997 1499 aaPredicted RBP4.68□□□□□ -1.66
CKS1BP3-201ENST00000600888 NFAT5O94916 1531 aa4.67□□□□□ -1.66
CKS1BP3-201ENST00000600888 AATKQ6ZMQ8 1374 aa4.67□□□□□ -1.66
CKS1BP3-201ENST00000600888 KTN1Q86UP2 1357 aaKnown RBP4.67□□□□□ -1.66
CKS1BP3-201ENST00000600888 EDC4Q6P2E9 1401 aaKnown RBP4.67□□□□□ -1.66
CKS1BP3-201ENST00000600888 GPR32O75388 356 aa4.67□□□□□ -1.66
CKS1BP3-201ENST00000600888 SNRPA1P09661 255 aaKnown RBP4.67□□□□□ -1.66
CKS1BP3-201ENST00000600888 RAP2AP10114 183 aa4.67□□□□□ -1.66
CKS1BP3-201ENST00000600888 FPR1P21462 350 aa4.67□□□□□ -1.66
CKS1BP3-201ENST00000600888 PCSK1P29120 753 aa4.67□□□□□ -1.66
CKS1BP3-201ENST00000600888 CLRN1P58418 232 aa4.67□□□□□ -1.66
CKS1BP3-201ENST00000600888 MTM1Q13496 603 aa4.67□□□□□ -1.66
CKS1BP3-201ENST00000600888 IL10RAQ13651 578 aa4.67□□□□□ -1.66
CKS1BP3-201ENST00000600888 UAP1L1Q3KQV9 507 aa4.67□□□□□ -1.66
CKS1BP3-201ENST00000600888 PLEKHG6Q3KR16 790 aa4.67□□□□□ -1.66
CKS1BP3-201ENST00000600888 C3orf36Q3SXR2 165 aa4.67□□□□□ -1.66
CKS1BP3-201ENST00000600888 RRP12Q5JTH9 1297 aaKnown RBP4.67□□□□□ -1.66
CKS1BP3-201ENST00000600888 EFCAB12Q6NXP0 572 aa4.67□□□□□ -1.66
CKS1BP3-201ENST00000600888 DRICH1Q6PGQ1 229 aaPredicted RBP4.67□□□□□ -1.66
CKS1BP3-201ENST00000600888 ZGPATQ8N5A5 531 aaKnown RBP4.67□□□□□ -1.66
CKS1BP3-201ENST00000600888 KCNH5Q8NCM2 988 aa4.67□□□□□ -1.66
CKS1BP3-201ENST00000600888 ZFP28Q8NHY6 868 aa4.67□□□□□ -1.66
CKS1BP3-201ENST00000600888 TFAP2CQ92754 450 aa4.67□□□□□ -1.66
CKS1BP3-201ENST00000600888 MRI1Q9BV20 369 aa4.67□□□□□ -1.66
CKS1BP3-201ENST00000600888 CSRNP2Q9H175 543 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms