RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 MTRRQ9UBK8 725 aa27.8■■■□□ 2.04
TRIM28-204ENST00000594806 AGAP1Q9UPQ3 857 aa27.8■■■□□ 2.04
TRIM28-204ENST00000594806 BICDL2A1A5D9 508 aa27.79■■■□□ 2.04
TRIM28-204ENST00000594806 BIN1O00499 593 aa27.79■■■□□ 2.04
TRIM28-204ENST00000594806 PPEF2O14830 753 aa27.79■■■□□ 2.04
TRIM28-204ENST00000594806 LINC01565O15544 149 aa27.79■■■□□ 2.04
TRIM28-204ENST00000594806 POLR2BP30876 1174 aaKnown RBP27.79■■■□□ 2.04
TRIM28-204ENST00000594806 CASP4P49662 377 aa27.79■■■□□ 2.04
TRIM28-204ENST00000594806 CLCN4P51793 760 aa27.79■■■□□ 2.04
TRIM28-204ENST00000594806 MRPL58Q14197 206 aaKnown RBP27.79■■■□□ 2.04
TRIM28-204ENST00000594806 VARS2Q5ST30 1063 aaKnown RBP27.79■■■□□ 2.04
TRIM28-204ENST00000594806 PRSS55Q6UWB4 352 aaPredicted RBP27.79■■■□□ 2.04
TRIM28-204ENST00000594806 CXorf38Q8TB03 319 aa27.79■■■□□ 2.04
TRIM28-204ENST00000594806 HDAC7Q8WUI4 952 aa27.79■■■□□ 2.04
TRIM28-204ENST00000594806 SENP8Q96LD8 212 aa27.79■■■□□ 2.04
TRIM28-204ENST00000594806 DZANK1Q9NVP4 752 aa27.79■■■□□ 2.04
TRIM28-204ENST00000594806 DSEQ9UL01 958 aa27.79■■■□□ 2.04
TRIM28-204ENST00000594806 MTCL1Q9Y4B5 1905 aaKnown RBP27.79■■■□□ 2.04
TRIM28-204ENST00000594806 PPP1R3GB7ZBB8 358 aa27.78■■■□□ 2.04
TRIM28-204ENST00000594806 IKBKBO14920 756 aa27.78■■■□□ 2.04
TRIM28-204ENST00000594806 TBX10O75333 385 aa27.78■■■□□ 2.04
TRIM28-204ENST00000594806 GLUD1P00367 558 aa27.78■■■□□ 2.04
TRIM28-204ENST00000594806 ODC1P11926 461 aa27.78■■■□□ 2.04
TRIM28-204ENST00000594806 MCCD1P59942 119 aaPredicted RBP27.78■■■□□ 2.04
TRIM28-204ENST00000594806 ANKRD40Q6AI12 368 aa27.78■■■□□ 2.04
TRIM28-204ENST00000594806 TRAPPC11Q7Z392 1133 aa27.78■■■□□ 2.04
TRIM28-204ENST00000594806 ZC3H3Q8IXZ2 948 aaKnown RBP27.78■■■□□ 2.04
TRIM28-204ENST00000594806 FAM186BQ8IYM0 893 aa27.78■■■□□ 2.04
TRIM28-204ENST00000594806 TMEM130Q8N3G9 435 aa27.78■■■□□ 2.04
TRIM28-204ENST00000594806 VN1R2Q8NFZ6 395 aa27.78■■■□□ 2.04
TRIM28-204ENST00000594806 OR5B17Q8NGF7 314 aa27.78■■■□□ 2.04
TRIM28-204ENST00000594806 GPT2Q8TD30 523 aa27.78■■■□□ 2.04
TRIM28-204ENST00000594806 CLSTN3Q9BQT9 956 aa27.78■■■□□ 2.04
TRIM28-204ENST00000594806 CLEC1BQ9P126 229 aa27.78■■■□□ 2.04
TRIM28-204ENST00000594806 PTPRJQ12913 1337 aa27.77■■■□□ 2.04
TRIM28-204ENST00000594806 KPNA7A9QM74 516 aa27.77■■■□□ 2.04
TRIM28-204ENST00000594806 AKAP3O75969 853 aa27.77■■■□□ 2.04
TRIM28-204ENST00000594806 OAZ2O95190 189 aa27.77■■■□□ 2.04
TRIM28-204ENST00000594806 KRT19P08727 400 aa27.77■■■□□ 2.04
TRIM28-204ENST00000594806 KRT13P13646 458 aa27.77■■■□□ 2.04
TRIM28-204ENST00000594806 CD44P16070 742 aaKnown RBP27.77■■■□□ 2.04
TRIM28-204ENST00000594806 MYO1EQ12965 1108 aa27.77■■■□□ 2.04
TRIM28-204ENST00000594806 LMBRD2Q68DH5 695 aaPredicted RBP27.77■■■□□ 2.04
TRIM28-204ENST00000594806 ZNF280DQ6N043 979 aa27.77■■■□□ 2.04
TRIM28-204ENST00000594806 ANKRD54Q6NXT1 300 aa27.77■■■□□ 2.04
TRIM28-204ENST00000594806 MSLNLQ96KJ4 702 aa27.77■■■□□ 2.04
TRIM28-204ENST00000594806 GZF1Q9H116 711 aaPredicted RBP27.77■■■□□ 2.04
TRIM28-204ENST00000594806 SIX4Q9UIU6 781 aa27.77■■■□□ 2.04
TRIM28-204ENST00000594806 SPTLC1O15269 473 aa27.76■■■□□ 2.03
TRIM28-204ENST00000594806 CYP11A1P05108 521 aa27.76■■■□□ 2.03
TRIM28-204ENST00000594806 EPB41P11171 864 aaKnown RBP27.76■■■□□ 2.03
TRIM28-204ENST00000594806 YWHAHQ04917 246 aaPredicted RBP27.76■■■□□ 2.03
TRIM28-204ENST00000594806 DLX2Q07687 328 aaPredicted RBP27.76■■■□□ 2.03
TRIM28-204ENST00000594806 RAB33AQ14088 237 aa27.76■■■□□ 2.03
TRIM28-204ENST00000594806 LLGL2Q6P1M3 1020 aa27.76■■■□□ 2.03
TRIM28-204ENST00000594806 MLKLQ8NB16 471 aa27.76■■■□□ 2.03
TRIM28-204ENST00000594806 BORCS6Q96GS4 357 aa27.76■■■□□ 2.03
TRIM28-204ENST00000594806 POP1Q99575 1024 aaKnown RBP27.76■■■□□ 2.03
TRIM28-204ENST00000594806 PLEKHA4Q9H4M7 779 aa27.76■■■□□ 2.03
TRIM28-204ENST00000594806 CD207Q9UJ71 328 aa27.76■■■□□ 2.03
TRIM28-204ENST00000594806 BARX2Q9UMQ3 279 aaPredicted RBP27.76■■■□□ 2.03
TRIM28-204ENST00000594806 FAM50BQ9Y247 325 aa27.76■■■□□ 2.03
TRIM28-204ENST00000594806 SLC16A3O15427 465 aaKnown RBP27.75■■■□□ 2.03
TRIM28-204ENST00000594806 TBC1D4O60343 1298 aa27.75■■■□□ 2.03
TRIM28-204ENST00000594806 VAMP7P51809 220 aa27.75■■■□□ 2.03
TRIM28-204ENST00000594806 SLC8B1Q6J4K2 584 aa27.75■■■□□ 2.03
TRIM28-204ENST00000594806 PLEKHO2Q8TD55 490 aa27.75■■■□□ 2.03
TRIM28-204ENST00000594806 NELFBQ8WX92 580 aa27.75■■■□□ 2.03
TRIM28-204ENST00000594806 CEP63Q96MT8 703 aa27.75■■■□□ 2.03
TRIM28-204ENST00000594806 ASB2Q96Q27 587 aa27.75■■■□□ 2.03
TRIM28-204ENST00000594806 GDAP2Q9NXN4 497 aa27.75■■■□□ 2.03
TRIM28-204ENST00000594806 LRRIQ3A6PVS8 624 aaPredicted RBP27.74■■■□□ 2.03
TRIM28-204ENST00000594806 CYB561D2O14569 222 aa27.74■■■□□ 2.03
TRIM28-204ENST00000594806 EPCAMP16422 314 aa27.74■■■□□ 2.03
TRIM28-204ENST00000594806 RPL17P18621 184 aaKnown RBP27.74■■■□□ 2.03
TRIM28-204ENST00000594806 PMS1P54277 932 aaKnown RBP27.74■■■□□ 2.03
TRIM28-204ENST00000594806 TFF2Q03403 129 aa27.74■■■□□ 2.03
TRIM28-204ENST00000594806 BFSP1Q12934 665 aa27.74■■■□□ 2.03
TRIM28-204ENST00000594806 PAK1Q13153 545 aa27.74■■■□□ 2.03
TRIM28-204ENST00000594806 CTXN3Q4LDR2 81 aa27.74■■■□□ 2.03
TRIM28-204ENST00000594806 LILRA6Q6PI73 481 aa27.74■■■□□ 2.03
TRIM28-204ENST00000594806 METTL23Q86XA0 190 aa27.74■■■□□ 2.03
TRIM28-204ENST00000594806 SPATA18Q8TC71 538 aa27.74■■■□□ 2.03
TRIM28-204ENST00000594806 ZNF516Q92618 1163 aa27.74■■■□□ 2.03
TRIM28-204ENST00000594806 EYSQ5T1H1 3165 aa27.74■■■□□ 2.03
TRIM28-204ENST00000594806 REV3LO60673 3130 aa27.74■■■□□ 2.03
TRIM28-204ENST00000594806 PLXNA3P51805 1871 aa27.73■■■□□ 2.03
TRIM28-204ENST00000594806 H3BQ06 376 aaPredicted RBP27.73■■■□□ 2.03
TRIM28-204ENST00000594806 TGM5O43548 720 aa27.73■■■□□ 2.03
TRIM28-204ENST00000594806 OR1D2P34982 312 aa27.73■■■□□ 2.03
TRIM28-204ENST00000594806 RBM10P98175 930 aaKnown RBP27.73■■■□□ 2.03
TRIM28-204ENST00000594806 SMAD4Q13485 552 aaKnown RBP27.73■■■□□ 2.03
TRIM28-204ENST00000594806 TRPC3Q13507 836 aa27.73■■■□□ 2.03
TRIM28-204ENST00000594806 OVOS1Q6IE37 1185 aa27.73■■■□□ 2.03
TRIM28-204ENST00000594806 KLHL10Q6JEL2 608 aa27.73■■■□□ 2.03
TRIM28-204ENST00000594806 RTL10Q7L3V2 364 aa27.73■■■□□ 2.03
TRIM28-204ENST00000594806 DPH6Q7L8W6 267 aa27.73■■■□□ 2.03
TRIM28-204ENST00000594806 SMRP1Q8NCR6 262 aa27.73■■■□□ 2.03
TRIM28-204ENST00000594806 HPDLQ96IR7 371 aa27.73■■■□□ 2.03
TRIM28-204ENST00000594806 FBXL5Q9UKA1 691 aa27.73■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms