RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 ZNF668Q96K58 619 aaPredicted RBP19.72■□□□□ 0.75
PRPF40B-208ENST00000548436 CPSF3Q9UKF6 684 aaKnown RBP19.72■□□□□ 0.75
PRPF40B-208ENST00000548436 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.72■□□□□ 0.75
PRPF40B-208ENST00000548436 SPDYE5A6NIY4 337 aa19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 NDUFAB1O14561 156 aa19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 POTEJP0CG39 1038 aa19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 SEC24CP53992 1094 aa19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 PPP2R2AP63151 447 aa19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 KRT17Q04695 432 aa19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 C1QBPQ07021 282 aaKnown RBP19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 MOGSQ13724 837 aa19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 DENND2CQ68D51 928 aa19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 RHPN2Q8IUC4 686 aa19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 ZBTB8OSQ8IWT0 167 aa19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 ANKRD13AQ8IZ07 590 aa19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 TLCD1Q96CP7 247 aa19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 SPATA33Q96N06 139 aa19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 MRPL47Q9HD33 250 aaKnown RBP19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 EBAG9O00559 213 aa19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 GAS2O43903 313 aaKnown RBP19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 TMOD1P28289 359 aa19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 NF2P35240 595 aa19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 CCDC62Q6P9F0 684 aa19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 KCNV1Q6PIU1 500 aa19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 ZBTB10Q96DT7 871 aa19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 MMP19Q99542 508 aa19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 MPHOSPH6Q99547 160 aaKnown RBP19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 KCNH4Q9UQ05 1017 aa19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 R3HDM2Q9Y2K5 976 aaKnown RBP19.71■□□□□ 0.75
PRPF40B-208ENST00000548436 TLR3O15455 904 aaKnown RBP19.7■□□□□ 0.74
PRPF40B-208ENST00000548436 PSTPIP1O43586 416 aa19.7■□□□□ 0.74
PRPF40B-208ENST00000548436 RALAP11233 206 aa19.7■□□□□ 0.74
PRPF40B-208ENST00000548436 CD58P19256 250 aa19.7■□□□□ 0.74
PRPF40B-208ENST00000548436 FGFR4P22455 802 aa19.7■□□□□ 0.74
PRPF40B-208ENST00000548436 RHOT1Q8IXI2 618 aa19.7■□□□□ 0.74
PRPF40B-208ENST00000548436 DHX37Q8IY37 1157 aaKnown RBP19.7■□□□□ 0.74
PRPF40B-208ENST00000548436 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.7■□□□□ 0.74
PRPF40B-208ENST00000548436 HEMGNQ9BXL5 484 aa19.7■□□□□ 0.74
PRPF40B-208ENST00000548436 DCLK3Q9C098 648 aa19.7■□□□□ 0.74
PRPF40B-208ENST00000548436 SCINQ9Y6U3 715 aa19.7■□□□□ 0.74
PRPF40B-208ENST00000548436 HOXC6P09630 235 aa19.69■□□□□ 0.74
PRPF40B-208ENST00000548436 PROZP22891 400 aa19.69■□□□□ 0.74
PRPF40B-208ENST00000548436 MMP8P22894 467 aa19.69■□□□□ 0.74
PRPF40B-208ENST00000548436 RPL7AP62424 266 aaKnown RBP19.69■□□□□ 0.74
PRPF40B-208ENST00000548436 KLF1Q13351 362 aaPredicted RBP19.69■□□□□ 0.74
PRPF40B-208ENST00000548436 KCTD2Q14681 263 aa19.69■□□□□ 0.74
PRPF40B-208ENST00000548436 DUOXA2Q1HG44 320 aa19.69■□□□□ 0.74
PRPF40B-208ENST00000548436 ZNF394Q53GI3 561 aa19.69■□□□□ 0.74
PRPF40B-208ENST00000548436 ANKS1BQ7Z6G8 1248 aa19.69■□□□□ 0.74
PRPF40B-208ENST00000548436 CCDC50Q8IVM0 306 aa19.69■□□□□ 0.74
PRPF40B-208ENST00000548436 FEZF2Q8TBJ5 459 aa19.69■□□□□ 0.74
PRPF40B-208ENST00000548436 MAIP1Q8WWC4 291 aa19.69■□□□□ 0.74
PRPF40B-208ENST00000548436 PTPRHQ9HD43 1115 aa19.69■□□□□ 0.74
PRPF40B-208ENST00000548436 CISHQ9NSE2 258 aa19.69■□□□□ 0.74
PRPF40B-208ENST00000548436 USTQ9Y2C2 406 aa19.69■□□□□ 0.74
PRPF40B-208ENST00000548436 RARGP13631 454 aa19.69■□□□□ 0.74
PRPF40B-208ENST00000548436 BRD2P25440 801 aaKnown RBP19.69■□□□□ 0.74
PRPF40B-208ENST00000548436 HOOK3Q86VS8 718 aa19.69■□□□□ 0.74
PRPF40B-208ENST00000548436 CDR2LQ86X02 465 aaPredicted RBP19.69■□□□□ 0.74
PRPF40B-208ENST00000548436 C10orf67Q8IYJ2 551 aa19.69■□□□□ 0.74
PRPF40B-208ENST00000548436 NLRP4Q96MN2 994 aa19.69■□□□□ 0.74
PRPF40B-208ENST00000548436 PDGFCQ9NRA1 345 aa19.69■□□□□ 0.74
PRPF40B-208ENST00000548436 PARVAQ9NVD7 372 aa19.69■□□□□ 0.74
PRPF40B-208ENST00000548436 WHRNQ9P202 907 aa19.69■□□□□ 0.74
PRPF40B-208ENST00000548436 B4GALT5O43286 388 aa19.68■□□□□ 0.74
PRPF40B-208ENST00000548436 RIPK2O43353 540 aa19.68■□□□□ 0.74
PRPF40B-208ENST00000548436 IVDP26440 423 aa19.68■□□□□ 0.74
PRPF40B-208ENST00000548436 CORO7P57737 925 aa19.68■□□□□ 0.74
PRPF40B-208ENST00000548436 TFAMQ00059 246 aaKnown RBP19.68■□□□□ 0.74
PRPF40B-208ENST00000548436 CALCOCO2Q13137 446 aa19.68■□□□□ 0.74
PRPF40B-208ENST00000548436 TTLL12Q14166 644 aaPredicted RBP19.68■□□□□ 0.74
PRPF40B-208ENST00000548436 SLMAPQ14BN4 828 aa19.68■□□□□ 0.74
PRPF40B-208ENST00000548436 SGSM1Q2NKQ1 1148 aa19.68■□□□□ 0.74
PRPF40B-208ENST00000548436 MPZL3Q6UWV2 235 aa19.68■□□□□ 0.74
PRPF40B-208ENST00000548436 TSHZ1Q6ZSZ6 1077 aa19.68■□□□□ 0.74
PRPF40B-208ENST00000548436 NLRP14Q86W24 1093 aa19.68■□□□□ 0.74
PRPF40B-208ENST00000548436 THNSL1Q8IYQ7 743 aa19.68■□□□□ 0.74
PRPF40B-208ENST00000548436 KATNAL2Q8IYT4 538 aa19.68■□□□□ 0.74
PRPF40B-208ENST00000548436 CEP120Q8N960 986 aa19.68■□□□□ 0.74
PRPF40B-208ENST00000548436 UHMK1Q8TAS1 419 aaKnown RBP19.68■□□□□ 0.74
PRPF40B-208ENST00000548436 CDCA5Q96FF9 252 aa19.68■□□□□ 0.74
PRPF40B-208ENST00000548436 NIF3L1Q9GZT8 377 aa19.68■□□□□ 0.74
PRPF40B-208ENST00000548436 C2orf40Q9H1Z8 148 aa19.68■□□□□ 0.74
PRPF40B-208ENST00000548436 PPANQ9NQ55 473 aaKnown RBP19.68■□□□□ 0.74
PRPF40B-208ENST00000548436 AAASQ9NRG9 546 aa19.68■□□□□ 0.74
PRPF40B-208ENST00000548436 RNF181Q9P0P0 153 aa19.68■□□□□ 0.74
PRPF40B-208ENST00000548436 WEE2P0C1S8 567 aa19.67■□□□□ 0.74
PRPF40B-208ENST00000548436 GJC1P36383 396 aa19.67■□□□□ 0.74
PRPF40B-208ENST00000548436 OSTNP61366 133 aa19.67■□□□□ 0.74
PRPF40B-208ENST00000548436 IRX5P78411 483 aaPredicted RBP19.67■□□□□ 0.74
PRPF40B-208ENST00000548436 PPIL2Q13356 520 aa19.67■□□□□ 0.74
PRPF40B-208ENST00000548436 PTK6Q13882 451 aa19.67■□□□□ 0.74
PRPF40B-208ENST00000548436 ATF7IP2Q5U623 682 aa19.67■□□□□ 0.74
PRPF40B-208ENST00000548436 WDR78Q5VTH9 848 aa19.67■□□□□ 0.74
PRPF40B-208ENST00000548436 EEF1DP3Q658K8 133 aa19.67■□□□□ 0.74
PRPF40B-208ENST00000548436 PPP1R2P3Q6NXS1 205 aa19.67■□□□□ 0.74
PRPF40B-208ENST00000548436 EXOC8Q8IYI6 725 aa19.67■□□□□ 0.74
PRPF40B-208ENST00000548436 MYCBPAPQ8TBZ2 947 aa19.67■□□□□ 0.74
PRPF40B-208ENST00000548436 OPTNQ96CV9 577 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms