RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 PCDHB8Q9UN66 801 aa18.49■□□□□ 0.55
VPS29-204ENST00000548259 VWA8A3KMH1 1905 aa18.49■□□□□ 0.55
VPS29-204ENST00000548259 MYBPHLA2RUH7 354 aa18.48■□□□□ 0.55
VPS29-204ENST00000548259 SPECC1L-ADORA2AF8WAN1 911 aa18.48■□□□□ 0.55
VPS29-204ENST00000548259 K7ESF4 209 aa18.48■□□□□ 0.55
VPS29-204ENST00000548259 ARNTLO00327 626 aa18.48■□□□□ 0.55
VPS29-204ENST00000548259 GDF9O60383 454 aa18.48■□□□□ 0.55
VPS29-204ENST00000548259 MOSPD3O75425 235 aa18.48■□□□□ 0.55
VPS29-204ENST00000548259 CCT6AP40227 531 aaKnown RBP18.48■□□□□ 0.55
VPS29-204ENST00000548259 PLCB2Q00722 1185 aa18.48■□□□□ 0.55
VPS29-204ENST00000548259 YWHAHQ04917 246 aaPredicted RBP18.48■□□□□ 0.55
VPS29-204ENST00000548259 SRSF5Q13243 272 aaKnown RBP18.48■□□□□ 0.55
VPS29-204ENST00000548259 GAS6Q14393 721 aa18.48■□□□□ 0.55
VPS29-204ENST00000548259 ARHGAP15Q53QZ3 475 aa18.48■□□□□ 0.55
VPS29-204ENST00000548259 USP37Q86T82 979 aa18.48■□□□□ 0.55
VPS29-204ENST00000548259 CEP120Q8N960 986 aa18.48■□□□□ 0.55
VPS29-204ENST00000548259 RBM12Q9NTZ6 932 aaKnown RBP18.48■□□□□ 0.55
VPS29-204ENST00000548259 KCNG1Q9UIX4 513 aa18.48■□□□□ 0.55
VPS29-204ENST00000548259 YIPF1Q9Y548 306 aa18.48■□□□□ 0.55
VPS29-204ENST00000548259 ASB3Q9Y575 518 aa18.48■□□□□ 0.55
VPS29-204ENST00000548259 A0A1W2PRU2 124 aa18.47■□□□□ 0.55
VPS29-204ENST00000548259 FDPSP14324 419 aaKnown RBP18.47■□□□□ 0.55
VPS29-204ENST00000548259 CTHP32929 405 aa18.47■□□□□ 0.55
VPS29-204ENST00000548259 PEX3P56589 373 aa18.47■□□□□ 0.55
VPS29-204ENST00000548259 MPZL3Q6UWV2 235 aa18.47■□□□□ 0.55
VPS29-204ENST00000548259 RNF19BQ6ZMZ0 732 aa18.47■□□□□ 0.55
VPS29-204ENST00000548259 CACNA2D4Q7Z3S7 1137 aa18.47■□□□□ 0.55
VPS29-204ENST00000548259 SHKBP1Q8TBC3 707 aa18.47■□□□□ 0.55
VPS29-204ENST00000548259 DRC1Q96MC2 740 aa18.47■□□□□ 0.55
VPS29-204ENST00000548259 ZMAT2Q96NC0 199 aaKnown RBP18.47■□□□□ 0.55
VPS29-204ENST00000548259 RAB34Q9BZG1 259 aa18.47■□□□□ 0.55
VPS29-204ENST00000548259 THG1LQ9NWX6 298 aaKnown RBP18.47■□□□□ 0.55
VPS29-204ENST00000548259 OBP2AQ9NY56 170 aa18.47■□□□□ 0.55
VPS29-204ENST00000548259 CHD6Q8TD26 2715 aa18.47■□□□□ 0.55
VPS29-204ENST00000548259 CACNA1GO43497 2377 aa18.46■□□□□ 0.55
VPS29-204ENST00000548259 CCDC163A0A0D9SF12 145 aa18.46■□□□□ 0.55
VPS29-204ENST00000548259 OR6C75A6NL08 312 aa18.46■□□□□ 0.55
VPS29-204ENST00000548259 WNT7AO00755 349 aa18.46■□□□□ 0.55
VPS29-204ENST00000548259 AXIN1O15169 862 aa18.46■□□□□ 0.55
VPS29-204ENST00000548259 ATG13O75143 517 aa18.46■□□□□ 0.55
VPS29-204ENST00000548259 ZNF806P0C7X5 589 aa18.46■□□□□ 0.55
VPS29-204ENST00000548259 NPTX2P47972 431 aa18.46■□□□□ 0.55
VPS29-204ENST00000548259 SHC2P98077 582 aa18.46■□□□□ 0.55
VPS29-204ENST00000548259 STRN3Q13033 797 aa18.46■□□□□ 0.55
VPS29-204ENST00000548259 ITIH5Q86UX2 942 aa18.46■□□□□ 0.55
VPS29-204ENST00000548259 ARID3BQ8IVW6 561 aaPredicted RBP18.46■□□□□ 0.55
VPS29-204ENST00000548259 C18orf25Q96B23 403 aaPredicted RBP18.46■□□□□ 0.55
VPS29-204ENST00000548259 TARS2Q9BW92 718 aaKnown RBP18.46■□□□□ 0.55
VPS29-204ENST00000548259 ARRDC1-AS1Q9H2J1 176 aa18.46■□□□□ 0.55
VPS29-204ENST00000548259 C17orf75Q9HAS0 396 aa18.46■□□□□ 0.55
VPS29-204ENST00000548259 PTPRHQ9HD43 1115 aa18.46■□□□□ 0.55
VPS29-204ENST00000548259 KMT5AQ9NQR1 393 aa18.46■□□□□ 0.55
VPS29-204ENST00000548259 USP24Q9UPU5 2620 aa18.45■□□□□ 0.54
VPS29-204ENST00000548259 NRG2O14511 850 aaPredicted RBP18.45■□□□□ 0.54
VPS29-204ENST00000548259 DTNBO60941 627 aa18.45■□□□□ 0.54
VPS29-204ENST00000548259 RPP40O75818 363 aaKnown RBP18.45■□□□□ 0.54
VPS29-204ENST00000548259 OAZ2O95190 189 aa18.45■□□□□ 0.54
VPS29-204ENST00000548259 CCDC192P0DO97 292 aa18.45■□□□□ 0.54
VPS29-204ENST00000548259 HARSP12081 509 aaKnown RBP18.45■□□□□ 0.54
VPS29-204ENST00000548259 PMLP29590 882 aa18.45■□□□□ 0.54
VPS29-204ENST00000548259 SOX9P48436 509 aa18.45■□□□□ 0.54
VPS29-204ENST00000548259 FOSBP53539 338 aa18.45■□□□□ 0.54
VPS29-204ENST00000548259 Q6ZS52 159 aa18.45■□□□□ 0.54
VPS29-204ENST00000548259 BEST2Q8NFU1 509 aa18.45■□□□□ 0.54
VPS29-204ENST00000548259 GAB3Q8WWW8 586 aa18.45■□□□□ 0.54
VPS29-204ENST00000548259 GTF3C6Q969F1 213 aa18.45■□□□□ 0.54
VPS29-204ENST00000548259 EXOC4Q96A65 974 aa18.45■□□□□ 0.54
VPS29-204ENST00000548259 GCNAQ96QF7 691 aa18.45■□□□□ 0.54
VPS29-204ENST00000548259 ATXN3LQ9H3M9 355 aa18.45■□□□□ 0.54
VPS29-204ENST00000548259 KIAA1024Q9UPX6 916 aa18.45■□□□□ 0.54
VPS29-204ENST00000548259 PCDHGA5Q9Y5G8 931 aa18.45■□□□□ 0.54
VPS29-204ENST00000548259 ZFHX4Q86UP3 3567 aa18.44■□□□□ 0.54
VPS29-204ENST00000548259 XPOTO43592 962 aaKnown RBP18.44■□□□□ 0.54
VPS29-204ENST00000548259 AMPD2Q01433 879 aa18.44■□□□□ 0.54
VPS29-204ENST00000548259 DUSP4Q13115 394 aa18.44■□□□□ 0.54
VPS29-204ENST00000548259 PON2Q15165 354 aa18.44■□□□□ 0.54
VPS29-204ENST00000548259 N4BP2L1Q5TBK1 243 aaPredicted RBP18.44■□□□□ 0.54
VPS29-204ENST00000548259 ARMCX5Q6P1M9 558 aa18.44■□□□□ 0.54
VPS29-204ENST00000548259 NECAB1Q8N987 351 aa18.44■□□□□ 0.54
VPS29-204ENST00000548259 NSUN7Q8NE18 718 aaKnown RBP18.44■□□□□ 0.54
VPS29-204ENST00000548259 PLEKHA5Q9HAU0 1116 aa18.44■□□□□ 0.54
VPS29-204ENST00000548259 POLD4Q9HCU8 107 aa18.44■□□□□ 0.54
VPS29-204ENST00000548259 ARHGAP28Q9P2N2 729 aa18.44■□□□□ 0.54
VPS29-204ENST00000548259 LRWD1Q9UFC0 647 aa18.44■□□□□ 0.54
VPS29-204ENST00000548259 SLC8A2Q9UPR5 921 aa18.44■□□□□ 0.54
VPS29-204ENST00000548259 DNM3Q9UQ16 869 aa18.44■□□□□ 0.54
VPS29-204ENST00000548259 TOM1L1O75674 476 aa18.43■□□□□ 0.54
VPS29-204ENST00000548259 AKAP3O75969 853 aa18.43■□□□□ 0.54
VPS29-204ENST00000548259 EPN2O95208 641 aa18.43■□□□□ 0.54
VPS29-204ENST00000548259 PROZP22891 400 aa18.43■□□□□ 0.54
VPS29-204ENST00000548259 ANAPC15P60006 121 aa18.43■□□□□ 0.54
VPS29-204ENST00000548259 GRSF1Q12849 480 aaKnown RBP eCLIP18.43■□□□□ 0.54
VPS29-204ENST00000548259 GPR17Q13304 367 aa18.43■□□□□ 0.54
VPS29-204ENST00000548259 GNL2Q13823 731 aaKnown RBP18.43■□□□□ 0.54
VPS29-204ENST00000548259 CCINQ13939 588 aa18.43■□□□□ 0.54
VPS29-204ENST00000548259 NOLC1Q14978 699 aaKnown RBP eCLIP18.43■□□□□ 0.54
VPS29-204ENST00000548259 VEPH1Q14D04 833 aa18.43■□□□□ 0.54
VPS29-204ENST00000548259 SF3A2Q15428 464 aaKnown RBP18.43■□□□□ 0.54
VPS29-204ENST00000548259 ZNF174Q15697 407 aa18.43■□□□□ 0.54
VPS29-204ENST00000548259 ITPRIPL2Q3MIP1 535 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms