RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 MFSD14AQ96MC6 490 aa8.21□□□□□ -1.09
VPS13D-211ENST00000543710 RANBP17Q9H2T7 1088 aaKnown RBP8.21□□□□□ -1.09
VPS13D-211ENST00000543710 PIH1D3Q9NQM4 214 aaKnown RBP8.21□□□□□ -1.09
VPS13D-211ENST00000543710 SAMSN1Q9NSI8 373 aaKnown RBP8.21□□□□□ -1.09
VPS13D-211ENST00000543710 UNCXA6NJT0 531 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 ZRANB2O95218 330 aaKnown RBP eCLIP8.21□□□□□ -1.1
VPS13D-211ENST00000543710 CXCL9Q07325 125 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 HIC1Q14526 733 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 CYTH1Q15438 398 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 CMTR1Q8N1G2 835 aaKnown RBP8.21□□□□□ -1.1
VPS13D-211ENST00000543710 C17orf53Q8N3J3 647 aaPredicted RBP8.21□□□□□ -1.1
VPS13D-211ENST00000543710 MRPS31Q92665 395 aaKnown RBP8.21□□□□□ -1.1
VPS13D-211ENST00000543710 ATP6V1E2Q96A05 226 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 MED15Q96RN5 788 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 TRIM54Q9BYV2 358 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 MMADHCQ9H3L0 296 aaPredicted RBP8.21□□□□□ -1.1
VPS13D-211ENST00000543710 CCDC134Q9H6E4 229 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 ZWILCHQ9H900 591 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 KLC4Q9NSK0 619 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 SLCO1B7G3V0H7 640 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 SRP72O76094 671 aaKnown RBP8.21□□□□□ -1.1
VPS13D-211ENST00000543710 THPOP40225 353 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 MTMR2Q13614 643 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 NAB2Q15742 525 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 DCAF4L1Q3SXM0 396 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 TRIM60Q495X7 471 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 PRMT9Q6P2P2 845 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 TTC23LQ6PF05 361 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 DNAAF3Q8N9W5 541 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 USP13Q92995 863 aaPredicted RBP8.21□□□□□ -1.1
VPS13D-211ENST00000543710 SENP7Q9BQF6 1050 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 ADAM22Q9P0K1 906 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 WHRNQ9P202 907 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 ZSWIM5Q9P217 1185 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 TUBGCP4Q9UGJ1 667 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 TPX2Q9ULW0 747 aaKnown RBP8.21□□□□□ -1.1
VPS13D-211ENST00000543710 EDARQ9UNE0 448 aa8.21□□□□□ -1.1
VPS13D-211ENST00000543710 ZBTB12Q9Y330 459 aaPredicted RBP8.21□□□□□ -1.1
VPS13D-211ENST00000543710 SLC15A5A6NIM6 579 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 MEFVO15553 781 aaPredicted RBP8.2□□□□□ -1.1
VPS13D-211ENST00000543710 TSHRP16473 764 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 ADORA1P30542 326 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 ZNF135P52742 658 aaPredicted RBP8.2□□□□□ -1.1
VPS13D-211ENST00000543710 TMPRSS15P98073 1019 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 MXD4Q14582 209 aaPredicted RBP8.2□□□□□ -1.1
VPS13D-211ENST00000543710 SUZ12Q15022 739 aaKnown RBP8.2□□□□□ -1.1
VPS13D-211ENST00000543710 FAM133BQ5BKY9 247 aaKnown RBP8.2□□□□□ -1.1
VPS13D-211ENST00000543710 UGT3A1Q6NUS8 523 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 ARHGEF26Q96DR7 871 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 SAMD11Q96NU1 681 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 TSPAN18Q96SJ8 248 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 C1QTNF1Q9BXJ1 281 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 PUS7LQ9H0K6 701 aaKnown RBP8.2□□□□□ -1.1
VPS13D-211ENST00000543710 SMARCAD1Q9H4L7 1026 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 ABI2Q9NYB9 513 aaPredicted RBP8.2□□□□□ -1.1
VPS13D-211ENST00000543710 KIF17Q9P2E2 1029 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 EMSYQ7Z589 1322 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 FTCDO95954 541 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 GYS1P13807 737 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 YWHAHQ04917 246 aaPredicted RBP8.2□□□□□ -1.1
VPS13D-211ENST00000543710 RCN2Q14257 317 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 KPNB1Q14974 876 aaKnown RBP8.2□□□□□ -1.1
VPS13D-211ENST00000543710 NR1I3Q14994 352 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 TEAD4Q15561 434 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 SLC18A3Q16572 532 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 C16orf87Q6PH81 154 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 LINC00116Q8NCU8 138 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 GID8Q9NWU2 228 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 PAK5Q9P286 719 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 PYGMP11217 842 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 ALADP13716 330 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 MTMR1Q13613 665 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 ZNF827Q17R98 1081 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 WDR93Q6P2C0 686 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 C4orf50Q6ZRC1 276 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 OOSP2Q86WS3 158 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 IFNL1Q8IU54 200 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 MRPL48Q96GC5 212 aaKnown RBP8.2□□□□□ -1.1
VPS13D-211ENST00000543710 CYTH2Q99418 400 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 ZNF518BQ9C0D4 1074 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 TBC1D4O60343 1298 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 PNPLA4P41247 253 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 KIF19Q2TAC6 998 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 GAS2L3Q86XJ1 694 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 MAML1Q92585 1016 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 JADE3Q92613 823 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 GJA10Q969M2 543 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 TNIP3Q96KP6 325 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 MAGEB10Q96LZ2 347 aaPredicted RBP8.2□□□□□ -1.1
VPS13D-211ENST00000543710 CD4P01730 458 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 FCGR1AP12314 374 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 MAPK1P28482 360 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 QARSP47897 775 aaKnown RBP8.2□□□□□ -1.1
VPS13D-211ENST00000543710 HEATR6Q6AI08 1181 aaKnown RBP8.2□□□□□ -1.1
VPS13D-211ENST00000543710 MAEAQ7L5Y9 396 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 PPWD1Q96BP3 646 aaKnown RBP8.2□□□□□ -1.1
VPS13D-211ENST00000543710 ABHD8Q96I13 439 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 ZNF512Q96ME7 567 aaPredicted RBP8.2□□□□□ -1.1
VPS13D-211ENST00000543710 EPAS1Q99814 870 aa8.2□□□□□ -1.1
VPS13D-211ENST00000543710 BRD8Q9H0E9 1235 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms